PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000451.1_g00024.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 848aa    MW: 93355.1 Da    PI: 6.7094
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000451.1_g00024.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.2e-191674357
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             k  ++t+eq+++Le+l++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  Itr_sc000451.1_g00024.1 16 KYVRYTPEQVDALERLYHECPKPSSMRRQQLIRECpilsNIESRQIKVWFQNRRCREKQ 74
                             5679*****************************************************97 PP
2START166.61.8e-521723783204
                              HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                    START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                              a e+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ve+l d++  W ++++ +++l+vi ++
  Itr_sc000451.1_g00024.1 172 AKETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPTRVVEILKDRP-SWFRDCRTVDVLNVIPTA 256
                              67899****************************************************9998888888.****************99 PP

                              ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
                    START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwve 168
                                g+++l +++l+a+++l+p Rdf+ +Ry   l +g+++++++S+ + q+ p+    +++vRae+lpSg+li+p+++g+s +++v+
  Itr_sc000451.1_g00024.1 257 ngGTIELLYMQLYAPTTLAPaRDFWLLRYASVLDDGSLAVCERSLGNIQNGPSvppVPNFVRAEMLPSGYLIRPCDGGGSIIHIVD 342
                              99************************************************9999999***************************** PP

                              -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                    START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                              h++l++++++++lr+l++s+++ + kt++a+l +++
  Itr_sc000451.1_g00024.1 343 HMNLEAWSVPEVLRPLYESSAMLAHKTTMAALCHLR 378
                              ******************************997765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4351175IPR001356Homeobox domain
SMARTSM003894.9E-151379IPR001356Homeobox domain
SuperFamilySSF466891.24E-161579IPR009057Homeodomain-like
CDDcd000863.29E-161676No hitNo description
PfamPF000462.0E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-181874IPR009057Homeodomain-like
CDDcd146866.19E-568107No hitNo description
PROSITE profilePS5084823.623161362IPR002913START domain
CDDcd088759.06E-75165381No hitNo description
SMARTSM002343.6E-40170380IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-20171361IPR023393START-like domain
SuperFamilySSF559612.33E-37171382No hitNo description
PfamPF018521.4E-49172378IPR002913START domain
SuperFamilySSF559611.65E-5408502No hitNo description
SuperFamilySSF559611.65E-5531606No hitNo description
PfamPF086701.2E-48705847IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MSISCKEGKS VLDNGKYVRY TPEQVDALER LYHECPKPSS MRRQQLIREC PILSNIESRQ  60
IKVWFQNRRC REKQRKEASR FQSVNRKLTA MNKLLMEENA RLQKQVSQLV YENGHFRRQT  120
PSVRIFSSCS NQITGIGTKD TSCESVVTSG QLQLTPQHPP RDASPEGLLC IAKETLAEFL  180
SKATGTAVEW VQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV VEILKDRPSW  240
FRDCRTVDVL NVIPTANGGT IELLYMQLYA PTTLAPARDF WLLRYASVLD DGSLAVCERS  300
LGNIQNGPSV PPVPNFVRAE MLPSGYLIRP CDGGGSIIHI VDHMNLEAWS VPEVLRPLYE  360
SSAMLAHKTT MAALCHLRQI AQEVSQPNLT NSGRRPAALR ALRQRLSRGF NEAVNGFTDE  420
GWSLLGNDGI DDVTVLVNSS PYKLMGLDLT FGNGFTSISN SVLCAKASML LQNVPPAMLL  480
RFLREHRSEW AENNIDAYSA AAIKVGPCIL PEARIFNFGN QVILPLAHAV EHEELLEVIK  540
FEGNGHSPDD AIMPRDMFLL QLCSGMDENA VGTCAELIFA PIDASFADDA PLLPSGFRII  600
PLDAGKEASS PSRTLDLTSA LETGTAENKA PNSLSTNNSA TRSVMTIAFQ FAYESHMQEA  660
VVSMARQYVR SVISSVQRVA LALSPSHLGS HAGLRLPLGT PEAHTLAQWI CQSYRCYLGV  720
ELLKYSGEGS ESILKALWSH SDAVVCCSAK ASPFLAFANQ AGLDMLETTL AALQDISLEK  780
IFDDHGRKTL CSEFPRIMQQ GFSCLQGGIC MSSMSRPISY EKAVAWKVLN EEENVHCICF  840
MFMNWSFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198775.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A314KZL50.0A0A314KZL5_NICAT; Homeobox-leucine zipper protein athb-15
STRINGXP_009774805.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]