PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000449.1_g00019.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 376aa    MW: 38901.9 Da    PI: 8.7324
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000449.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81.1e-09423827
                             GGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                             +++rtG Ck+G++Ck++H++
  Itr_sc000449.1_g00019.1  4 YYMRTGMCKFGASCKYHHPR 23
                             9*****************96 PP
2zf-CCCH34.63.1e-114469227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             ++++C+++ +tG+Ck+G +CkF+H++
  Itr_sc000449.1_g00019.1 44 GEKECSYYVKTGQCKFGITCKFHHPQ 69
                             7899********************97 PP
3zf-CCCH38.32.2e-12220246127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+++++tG Ck+G++C+++H+p
  Itr_sc000449.1_g00019.1 220 PGEPECQHYMKTGDCKFGSSCRYHHPP 246
                              5799*********************97 PP
4zf-CCCH31.92.3e-10268292327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++C++++ +G C++G++CkF H++
  Itr_sc000449.1_g00019.1 268 APICSHYSVNGVCNFGPSCKFDHPM 292
                              589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.361124IPR000571Zinc finger, CCCH-type
SMARTSM003561.2123IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6423IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-54269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3714270IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-84469IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-54570IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-44868IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-6219246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.967219247IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9221246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6223247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4225245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6264291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371265293IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6265292IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7268292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4270290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGEYYMRTGM CKFGASCKYH HPRQGGGSPA PVALNIYGCP LRPGEKECSY YVKTGQCKFG  60
ITCKFHHPQP AGIQVPAPSP GPGPGPGPGP LPAPTAVPPP AIYPIMQSPV QSSQQYGIMP  120
GNWSVPRPVL FPGSYIPGTY SPMLLPPGLV PVPGGWTPYP APLSPVASPN TQTTSGAGSV  180
YGFTQLSSSA PAYSGTYVSV TSSVAPSAGS QKEHAFPQRP GEPECQHYMK TGDCKFGSSC  240
RYHHPPDWSG PKTNFLLGPM GLPLRPGAPI CSHYSVNGVC NFGPSCKFDH PMGTLSYSPS  300
ASSLADIPTA PYPVGSAMGN LALPSSGLRP DLISGSNTRT YSKTGPAHSG TQQPGQSFSS  360
SGGSSTGHGG EVSTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175056.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-118C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A484KTB21e-172A0A484KTB2_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000583231e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.35e-93C3H family protein