 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Itr_sc000449.1_g00012.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
NF-YB |
| Protein Properties |
Length: 180aa MW: 19793.8 Da PI: 5.2923 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000449.1_g00012.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 159.7 | 4.4e-50 | 20 | 115 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
++q+ +lPianv+rimk+ lP nakisk+aket+qec+sefi+fvt+easdkc+re+rkt+ngdd++wal+tlGf+dyv plk yl
Itr_sc000449.1_g00012.1 20 QDQQLLLPIANVGRIMKQRLPHNAKISKEAKETMQECASEFIGFVTGEASDKCRRERRKTVNGDDICWALGTLGFDDYVGPLKRYL 105
5677899******************************************************************************* PP
NF-YB 88 kkyrelegek 97
+ +re eg++
Itr_sc000449.1_g00012.1 106 HIFREQEGDQ 115
*******997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 180 aa
Download sequence Send
to blast |
MAENSCAGGS IDEGGSRAEQ DQQLLLPIAN VGRIMKQRLP HNAKISKEAK ETMQECASEF 60
IGFVTGEASD KCRRERRKTV NGDDICWALG TLGFDDYVGP LKRYLHIFRE QEGDQRSVLN 120
NNNNEDSVME EDHLHAPLHS PSSSPGQPST NPVARREAPP PFPAPPHFFN STSYGGDSQG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1n1j_A | 2e-37 | 20 | 110 | 3 | 93 | NF-YB |
| 4awl_B | 2e-37 | 20 | 110 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| 4csr_A | 2e-37 | 20 | 110 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
