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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000446.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WRKY | ||||||||
Protein Properties | Length: 333aa MW: 36770.8 Da PI: 6.5148 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.1 | 3.8e-33 | 166 | 224 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt++ C vkk+vers+edp++v++tYeg+H h+ Itr_sc000446.1_g00011.1 166 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTPACGVKKRVERSSEDPSTVVTTYEGTHGHP 224 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-34 | 151 | 226 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-29 | 158 | 226 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.766 | 161 | 226 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.2E-38 | 166 | 225 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-26 | 167 | 224 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MENKAAELSK TENNNNNNNP MVSPSFSDQI PATFSLQTLF DIPSSDHNKN PSSSFFDYLF 60 PSQDLSTTVF DLLQTPQPPL LIPPPPSQSL PESSEAVNTP VTPNSSSISS SSNEAAIDDQ 120 VPKTPAEEVE QESDRSKKQL KPKRKNQKRE REPRVAFMTK SEVDHLDDGY RWRKYGQKAV 180 KNSPFPRSYY RCTTPACGVK KRVERSSEDP STVVTTYEGT HGHPCPVTPR ATTVGIMPEP 240 SNFGSVSAAS GGTGSPPSSS FLIPHHHFHY PMQQQQPFFA ITSPLPPPLT YTPSTGNLER 300 RFPPSSSSPA ARDDGLLQDM LPFPLRKEPC PEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-28 | 159 | 226 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-28 | 159 | 226 | 10 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019180129.1 | 0.0 | PREDICTED: probable WRKY transcription factor 48 isoform X1 | ||||
Swissprot | O22900 | 2e-56 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A385NHK0 | 5e-82 | A0A385NHK0_CAMSI; WRKY transcription factor | ||||
STRING | XP_010259241.1 | 1e-80 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 8e-45 | WRKY DNA-binding protein 48 |
Publications ? help Back to Top | |||
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