PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000443.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 350aa    MW: 38839.9 Da    PI: 4.6993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000443.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-20112161255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+G+r+++ +g+W+AeIrdps+     r++lg+f+taeeAa+a++  +++++g
  Itr_sc000443.1_g00005.1 112 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFDTAEEAARAYDTEARRIRG 161
                              69*******.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.8E-39112175IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22112170IPR016177DNA-binding domain
CDDcd000189.64E-33112170No hitNo description
Gene3DG3DSA:3.30.730.109.1E-33112170IPR001471AP2/ERF domain
PROSITE profilePS5103224.144112169IPR001471AP2/ERF domain
PRINTSPR003674.7E-12113124IPR001471AP2/ERF domain
PfamPF008477.0E-12113161IPR001471AP2/ERF domain
PRINTSPR003674.7E-12135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCGGAIISDI KPPARTSRRL TSELLWGSAD RSSAGGKKKK NFAGSYYSGG LRSAAFDLDN  60
EFEADFQDFN DYDDDDEGVE LDVKPFAFGL SSGFSSDSKD FDQSMKRKRK NQYRGIRQRP  120
WGKWAAEIRD PSKGVRVWLG TFDTAEEAAR AYDTEARRIR GNKAKLNFPA ETQAKSSRRT  180
VKVNPRKVVP KTVQPDASNM DNSYYDPMSV LEQKPPVKLY DSVGDMGLLS GGANLYFNSD  240
GGSNNSLDCT EHGSRTPEIS SALSAAVEAD EIQFIQETNP QKKLKSTENT TVEKLSEELS  300
AFEDQMKFFQ IPYLEGNWDS SVDTYLNVDG GNALDLWSFD DVPSLMGGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22112169260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1662330.0KC166233.1 Ipomoea batatas ethylene response factor 1 (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198756.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLM1JBK00.0M1JBK0_IPOBA; Ethylene response factor 1
STRINGXP_009775920.11e-144(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-62related to AP2 12