PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000440.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 344aa    MW: 38847.9 Da    PI: 6.6282
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000440.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.92.6e-46111393128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                              pGfrFhPt+eel+++yLk+ v gkkl+  +vi  ++iy+++PwdLp ++ + +e+ewyfF+ rd+++ +g r+nr+t++g+Wkatg
  Itr_sc000440.1_g00020.1  11 PGFRFHPTEEELLDFYLKNMVLGKKLRH-NVIGCLNIYRYDPWDLPgHANNVGEREWYFFVARDTRHGSGGRPNRTTEKGFWKATG 95 
                              9************************999.99***************555566999******************************* PP

                      NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +d++++s     ++ +glkktLvfy+grap+g ktdWvm+eyrl
  Itr_sc000440.1_g00020.1  96 SDRKIFSLshpPNRMIGLKKTLVFYQGRAPRGCKTDWVMNEYRL 139
                              ******976666778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.3199160IPR003441NAC domain
SuperFamilySSF1019412.75E-5310160IPR003441NAC domain
PfamPF023651.8E-2411139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEESRLEMEL PGFRFHPTEE ELLDFYLKNM VLGKKLRHNV IGCLNIYRYD PWDLPGHANN  60
VGEREWYFFV ARDTRHGSGG RPNRTTEKGF WKATGSDRKI FSLSHPPNRM IGLKKTLVFY  120
QGRAPRGCKT DWVMNEYRLP DALLPPSSAK NIVLCKIYRK ATSIKVLEQR AAMEDEINTL  180
ASPSFMTIDT TLYCSDHHHH HHHDLVAQSF LTVTMNNNNN KEEEDDDGEY STGTMLTVDG  240
EKAAAAEGEF SKDKLQLLPT SNSNSNSNSI TTSGSSLLLS LQSGEEVKPL LLPTKLELPS  300
AAAKSSSDYW ASHLQDPFWA QLRSPCLLND LIALTPLPPN LHNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4231606168Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165208.10.0PREDICTED: NAC domain-containing protein 35
TrEMBLA0A1U8EDX11e-99A0A1U8EDX1_CAPAN; NAC domain-containing protein 2
TrEMBLA0A2G2YKB61e-99A0A2G2YKB6_CAPAN; NAC domain-containing protein 67
STRINGXP_009605868.11e-98(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35312248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.15e-88NAC domain containing protein 36