PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000429.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 363aa MW: 40698.3 Da PI: 7.8177

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000429.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.4	4.4e-07	134	154	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C+ Gd C +aHg Itr_sc000429.1_g00013.1 134 ACPEFRK-GSCRKGDACEYAHG 154 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	4.9E-5	129	155	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.925	130	156	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-4	134	156	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-5	134	154	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	14	164	187	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.887	164	188	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MMIGEKYYSN QTVHVAPWPY RDDLTVDVHS ALITSNGNGN SNDDFSSLQN DAALKALMRY 60 LPSNSNDVVF ESDNERDVDL PVGAYSSDNF RMYDFKVRRC ARGRSHDWTE CPYAHPGEKA 120 RRRDPRKFHY SGTACPEFRK GSCRKGDACE YAHGVFECWL HPARYRTQPC KDGLSCRRRV 180 CFFAHAPEQL RVLSPRAESP HWYNSYECSC ESGSPPTESP PLSPSVNSLS RSHGSNSVNG 240 LVASMRQIQL NKVNSMPSSW KAQIGSPRLG SSRARPGFCS LPATPTQSVG RPGSCYFDLW 300 ERGLGKEEAP MERVESGRDL RAKMFERIGK ENPLDGENPS PNPYPTQADA PNPDFGWVSD 360 LVQ

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MMIGEKYYSN QTVHVAPWPY RDDLTVDVHS ALITSNGNGN SNDDFSSLQN DAALKALMRY  60
LPSNSNDVVF ESDNERDVDL PVGAYSSDNF RMYDFKVRRC ARGRSHDWTE CPYAHPGEKA  120
RRRDPRKFHY SGTACPEFRK GSCRKGDACE YAHGVFECWL HPARYRTQPC KDGLSCRRRV  180
CFFAHAPEQL RVLSPRAESP HWYNSYECSC ESGSPPTESP PLSPSVNSLS RSHGSNSVNG  240
LVASMRQIQL NKVNSMPSSW KAQIGSPRLG SSRARPGFCS LPATPTQSVG RPGSCYFDLW  300
ERGLGKEEAP MERVESGRDL RAKMFERIGK ENPLDGENPS PNPYPTQADA PNPDFGWVSD  360
LVQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199481.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	1e-113	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A1S3Y1A1	1e-165	A0A1S3Y1A1_TOBAC; zinc finger CCCH domain-containing protein 20-like
STRING	XP_009608132.1	1e-166	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1857	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-114	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]