PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000419.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CO-like
Protein Properties Length: 570aa    MW: 62163.1 Da    PI: 6.3919
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000419.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.3e-072050535
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                              C+ ++++++ l+C+ +   lC  C ++ H 
  Itr_sc000419.1_g00013.1 20 PCDFCNDQPAVLYCRADAAKLCLFCDQHVHA 50
                             7***************************995 PP
2zf-B_box18.73.5e-0661105341
                 zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                               ++C++++ +++   C + +  lC++C    H +      H+++p
  Itr_sc000419.1_g00013.1  61 SQICDNCGAEPVAVRCSSENLVLCQECDWDAHAScavsaaHDRSP 105
                              579*************************99997788888888776 PP
3CCT44.36.2e-165365641644
                      CCT  16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              +++K+irYesRKa+A++R+RvKGrFvk+a
  Itr_sc000419.1_g00013.1 536 RYDKHIRYESRKARADTRKRVKGRFVKAA 564
                              69*************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8121663IPR000315B-box-type zinc finger
SMARTSM003362.3E-101663IPR000315B-box-type zinc finger
CDDcd000214.50E-81951No hitNo description
PROSITE profilePS501199.72759106IPR000315B-box-type zinc finger
CDDcd000211.37E-663106No hitNo description
PROSITE profilePS5101710.08521563IPR010402CCT domain
PfamPF062031.6E-10536563IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MEMEESTHPS SDGVRGKIVP CDFCNDQPAV LYCRADAAKL CLFCDQHVHA ANALSRKHLR  60
SQICDNCGAE PVAVRCSSEN LVLCQECDWD AHASCAVSAA HDRSPVEAFS GCPLAAELAG  120
IWGLEIEEKK SGRLSGQNPS WTGLLDPWMP KEISNSVLLQ DLMVPSNNNP VVYSNPDGGG  180
GPSKKQSSGS CGKNKPVILK QLVELFKREG VDGGGGGGED IVPRTPNGGS GWQGNVAEGG  240
DGAVAVLNQH FQPEQQQQQQ PQNVPFTSLL MMQAPMKEDD RMVDGNMLWN NASRDRSPQV  300
FFLRVKSSTG LLAGMLGEGG PSLTPGDYRR RRPKGTSLAP GFQEEVGWAF LHFNLICNIW  360
DFNLGQLRDH DESSPLEVGY GANDVAYMMK SYSELLKEAS LANSKGSELS RMNFSVTQED  420
LTAFGHLAFE VSSIVVVGWR LREPSPTSCH QNMVLIATQN ISNNPTASQG PATSESNNLP  480
RLQPPLVLGY CKPKCHSKDI HFMDQTILVD SESATPSMTK ADIELLAKNR GNAMLRYDKH  540
IRYESRKARA DTRKRVKGRF VKAADAPDGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327332YRRRRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181240.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14 isoform X2
TrEMBLA0A484KSL21e-172A0A484KSL2_9ASTE; Uncharacterized protein
STRINGXP_009799598.11e-171(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.14e-53B-box type zinc finger protein with CCT domain