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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Itr_sc000419.1_g00006.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
NAC |
| Protein Properties |
Length: 256aa MW: 28666.3 Da PI: 8.839 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000419.1_g00006.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 165.7 | 1.6e-51 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrFhPtdeelvv+yLk kv + +l++ ++i+evdi+k++PwdLp e+e yfFs+r+ ky++g+r+nrat+sgyWkat
Itr_sc000419.1_g00006.1 14 LPPGFRFHPTDEELVVQYLKCKVLSCPLPA-SIIPEVDICKSDPWDLPGD---LEQERYFFSTREVKYPNGNRSNRATSSGYWKAT 95
79****************************.89***************54...46799**************************** PP
NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
g dk+++s+ +++lvg+kktLvfykg+ p+g +tdW+mheyrl
Itr_sc000419.1_g00006.1 96 GLDKQIVSSkgHRQLVGMKKTLVFYKGKPPQGARTDWIMHEYRL 139
********9777778***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MEKLSFVKNG VLRLPPGFRF HPTDEELVVQ YLKCKVLSCP LPASIIPEVD ICKSDPWDLP 60
GDLEQERYFF STREVKYPNG NRSNRATSSG YWKATGLDKQ IVSSKGHRQL VGMKKTLVFY 120
KGKPPQGART DWIMHEYRLT NAESLPNNPP QENWVLCRIF LKKRGAKNED ENTPAQAQTP 180
TQAQAVTNNR GAGLKNNGKP VFYDFLARER TDLNLAPASS SSGSSGVTEA SCNDKTDDHE 240
ESSSCCNSFT TFRTKP
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-52 | 12 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-52 | 12 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-52 | 12 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-52 | 12 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 3e-52 | 12 | 167 | 15 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 3e-52 | 12 | 167 | 15 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
