PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000418.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | bHLH | ||||||||
Protein Properties | Length: 395aa MW: 42829.7 Da PI: 5.1326 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.4 | 5.2e-08 | 297 | 337 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L Itr_sc000418.1_g00013.1 297 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 337 69******************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.332 | 288 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-14 | 293 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-13 | 294 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-12 | 296 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-5 | 297 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.03E-5 | 310 | 342 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MDIFDWDDEP FHVGGSSSAT TGITAMVVGQ AKPQVEELAP APFDPIHMVS SWNLPERQEA 60 AARLAADSMA ARQGWSDAAA IDGSGMCASG RDVLNRSGYV LNQGSGGLMG GDFCNFQAKA 120 PAAGSQLDSF DCLLSATNSN TDTSVEDDEI SMIFSADCKS LWNFNTGNAV SSGESACLEE 180 TVAKSATISD TINCSNLLGK RANPDPSNFN LIPENTQTKS KKSRQENPRP SSSNINFQQP 240 SSSASSVEEP DSEAIAQMKE MIYRAAAFRP VNFGAEAVEK PKRKNVRIST DPQTVAARQR 300 RERISERIRV LQRLVPGGSK MDTASMLDEA ANYLKFLRSQ VKALEAFGQK IDSSSSSLNF 360 NHFIPPSLPF NNYSFPMQPN NLPLYNPNPI HRPRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 297 | 302 | RQRRER |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019196248.1 | 0.0 | PREDICTED: transcription factor bHLH87 | ||||
Refseq | XP_019196249.1 | 0.0 | PREDICTED: transcription factor bHLH87 | ||||
Swissprot | Q8S3D2 | 4e-80 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | A0A3Q7FX64 | 1e-109 | A0A3Q7FX64_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g121240.1.1 | 1e-109 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4350 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 2e-61 | bHLH family protein |
Publications ? help Back to Top | |||
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