PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000417.1_g00044.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 440aa    MW: 47965.6 Da    PI: 8.0164
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000417.1_g00044.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.64.9e-40167244178
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              +CqvegC+ dls+ak+yh++h+vCe+hsk+p+v+v g+e+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrr +++
  Itr_sc000417.1_g00044.1 167 RCQVEGCNLDLSSAKQYHKKHRVCEKHSKCPKVIVGGVERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRNPRQ 244
                              6*************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.4E-33160229IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18165242IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-37167247IPR004333Transcription factor, SBP-box
PfamPF031102.6E-31168241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEWSARWGCE SLVMLSSKPG ESPKKLQLTD SEIVEDGELD ARSFNLSVEG GGGSDSGSGV  60
CGSDPGTKGS ISASSGTSPK DDMIASNFNS PGDFYKKMEQ QCVEVCVKSP PLDTLAGSVE  120
PLIGLKLGKR TYFERGNVKS LSSVAPVSSA PTSKRTKPSS QGLQISRCQV EGCNLDLSSA  180
KQYHKKHRVC EKHSKCPKVI VGGVERRFCQ QCSRFHSLSE FDEKKRSCRR RLSDHNARRR  240
NPRQDLIQFN STTLPSSFYD DRLQVNFVLN QVPILHSKTA ANSSWDTQSS KFTISEEFIS  300
EPEKTTSINR QPYISGIQLP NATGMHSNAW NWPLTSKGTN AEVFGQGSPS NVCTMQEFAC  360
ALSLLSTPSQ SSFEPISISN CNPAAHANQS NFPAETMLHA SANANANAIP QGLPLASSSS  420
EYWAVFNQFP CPYPGWGCQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27160240583squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180489.10.0PREDICTED: squamosa promoter-binding-like protein 3 isoform X2
TrEMBLM1D7X71e-127M1D7X7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000847341e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-59squamosa promoter binding protein-like 2