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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000415.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | B3 | ||||||||
Protein Properties | Length: 243aa MW: 27443.2 Da PI: 9.6546 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.7 | 2.1e-18 | 139 | 226 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+ ++ps+v+ +l lp f++++ ++++ t+tl desg +W + rk + l++GWk+F+ +++L +gD +vF+l++ Itr_sc000415.1_g00001.1 139 FVRSMLPSHVSGGFWLGLPSYFCRRNL--PARDETVTLIDESGAEWPTVYLARKAG----LSGGWKKFAVDHDLVDGDALVFQLIK 218 778899*****************9995..456779***************555555....*************************9 PP SSEE..EE CS B3 87 rsefelvv 94 r f+ ++ Itr_sc000415.1_g00001.1 219 RAVFKIYI 226 88885554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-22 | 131 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-25 | 132 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.32E-28 | 137 | 228 | No hit | No description |
Pfam | PF02362 | 6.1E-16 | 139 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.803 | 139 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-24 | 139 | 230 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVMSKVKYEE LRQQRVEENK RRLEELHLPL LSLALKNASP KPSPVYEEGE AARNQDRACP 60 GATIAPGRQI RRARVQRSIS YFSILIAVTY YERILPRSAS CPRRRDLSNR VYASDKDRAV 120 ATLKAEKLEA SLESNVPTFV RSMLPSHVSG GFWLGLPSYF CRRNLPARDE TVTLIDESGA 180 EWPTVYLARK AGLSGGWKKF AVDHDLVDGD ALVFQLIKRA VFKIYITRLN NSADDDGNET 240 SND |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019174983.1 | 1e-124 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X1 | ||||
TrEMBL | A0A328DPU8 | 1e-108 | A0A328DPU8_9ASTE; Uncharacterized protein | ||||
STRING | XP_009783454.1 | 5e-92 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-54 | B3 family protein |