PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000412.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 546aa    MW: 59665.8 Da    PI: 6.9344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000412.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-13255303255
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r +h++ E+rRR++iN++ + Lr+++P++    ++K +Ka+ L +++eYI+ Lq
  Itr_sc000412.1_g00011.1 255 RSKHSATEQRRRSKINDR-HMLRDIIPHS----DQKRDKASFLLEVIEYIQFLQ 303
                              889***************.89*******9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-20250323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15251323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.969253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10255303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.43E-13255307No hitNo description
SMARTSM003531.2E-9259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MELPQPRAFG TDGRKTTHDF LSLYSPAEQD PRPRQGGYLR THDFLQPLEQ AEGTVGKEES  60
KVEVTIAEKP PPPPSMEHNL PGGIGTYSIS YLQRVPKPEG SLFAMAQPSS TERNDENSNC  120
SSYSGSGFTL WDETAVKKGK TGKENSSGER HVLRETGVNT GGQRPGAMEW PSQSSSNLKH  180
STAAFSSFSS SQQLAAQNNQ SFLNMITSAK SAQEEDEDED DEEFVIKKEP SPHPKGNLSV  240
KTVGKSNDQK PNTPRSKHSA TEQRRRSKIN DRHMLRDIIP HSDQKRDKAS FLLEVIEYIQ  300
FLQEKVQKHE GSYQSWEHEP TKLPWNNCQR GAQGFIDQSQ GTNNASDPAL IFASKFADSK  360
PGISRTIPVN GQKAEPDMST ALIKDGGHQQ PMPLPFDPNI FPLCGTRNIA SQPLPKLVSG  420
KDKSTSQHQP QFPQSRSNTS NYTVASNEPK DQDPTIESGT ISISSIYSQG LLSTLTTALQ  480
SSGVDLSQAS ISVHIDLGKR ANGRLNSSAS TIKGDDVSTS NQPIPHSLVT SAGDESSQAL  540
KRIKTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152638.10.0PREDICTED: transcription factor BIM1 isoform X2
TrEMBLA0A484MQY60.0A0A484MQY6_9ASTE; Uncharacterized protein
STRINGSolyc03g114720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-81bHLH family protein