|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Itr_sc000412.1_g00003.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
Family |
MIKC_MADS |
Protein Properties |
Length: 227aa MW: 25693.4 Da PI: 9.1208 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Itr_sc000412.1_g00003.1 | genome | Kazusa | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 96.8 | 9.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gkl+e++s
Itr_sc000412.1_g00003.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLFEFCS 59
79***********************************************96 PP
|
2 | K-box | 93.3 | 4e-31 | 80 | 171 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94
+++++++ ++e+ kLk+++e Lqr+qR+llGedL++Ls+keL qLe+q+e+sl++iRs+K++ +++q+ elq+ke +l ++n+ L
Itr_sc000412.1_g00003.1 80 ANQSNTQDNYHEYLKLKAKVELLQRSQRNLLGEDLGPLSIKELGQLEHQVESSLSQIRSTKTQSMMNQLVELQQKELALVDANNLL 165
578899******************************************************************************** PP
K-box 95 rkklee 100
++klee
Itr_sc000412.1_g00003.1 166 KMKLEE 171
***987 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 33.151 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.10E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-34 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-25 | 81 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.7 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLFEFCSS 60 SSMMKTLEKY HRCNYASLEA NQSNTQDNYH EYLKLKAKVE LLQRSQRNLL GEDLGPLSIK 120 ELGQLEHQVE SSLSQIRSTK TQSMMNQLVE LQQKELALVD ANNLLKMKLE ERTAATIHQQ 180 PAIGFFQPVG VNSTTSQLGF HHVGSDEINA EVSSAHNING FIPGWML
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 2e-23 | 90 | 169 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-23 | 90 | 169 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-23 | 90 | 169 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-23 | 90 | 169 | 22 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |