PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000390.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 296aa    MW: 33561.9 Da    PI: 4.5649
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000390.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.6e-093272348
                             -HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                             +W++Ia  ++ gRt++++k++w+++l
  Itr_sc000390.1_g00001.1  3 RWSLIATQLP-GRTDNEIKNYWNSHL 27
                             5*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.747131IPR017930Myb domain
PfamPF002491.1E-6327IPR001005SANT/Myb domain
SuperFamilySSF466894.57E-7331IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-12327IPR009057Homeodomain-like
CDDcd001671.93E-6327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MCRWSLIATQ LPGRTDNEIK NYWNSHLSRK FYSFRRAGSE KTIENLETDL VKAAEQTKRR  60
RGKVSRSDMK KNKTTGYKHY SSNNNQAPEF PHFQTHHTHQ DTIPSLCTDP VNNNVVVSTV  120
QISSTPPILM DKEDIDTSSF LCMAEDYFSL DDIMPVLEEE MDPAGIILST SLNGSLENIV  180
KEFGLQVVQS QHDLAKSGNS SVDIYSGLIP NDHHQFGGEN NESTATSSSF PVEHHCSLAQ  240
NISDWDDLQY FWDDSGNNLC NTQNLMPQQN EDDVMLSSPW PWDDTFYDIM HGNTGE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188365.11e-122PREDICTED: transcription repressor MYB6-like
RefseqXP_019188366.11e-122PREDICTED: transcription repressor MYB6-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1966523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.14e-16myb domain protein 12