PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000379.1_g00015.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 383aa MW: 43054 Da PI: 6.7548

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000379.1_g00015.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.9	6.8e-11	89	122	5	38
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 k+ rr+++NReAAr+sR+RKka++++Le +L Itr_sc000379.1_g00015.1 89 KVLRRLAQNREAARKSRLRKKAYVQQLESSKLKL 122 788************************9754444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.5E-8	83	132	No hit	No description
SMART	SM00338	9.6E-5	85	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.668	87	129	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.9E-8	89	118	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.78E-22	89	141	No hit	No description
SuperFamily	SSF57959	5.63E-7	89	126	No hit	No description
PROSITE pattern	PS00036	0	92	107	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.5E-26	186	260	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MNSTYTQFVA SKRMGICDPI HQLGMWGDFK GNGFATPSAA TMILEVEKSL DNPMPVIEKT 60 LDNQMEDMSH GSLGPSNKYE HEASKPIEKV LRRLAQNREA ARKSRLRKKA YVQQLESSKL 120 KLIQLEQELD RARQQGLYVS GGLDSSLLGY SGSPNSDLSP SLTEPAAITA FEMAYGHWVE 180 EQTRRINDLR NALHSQVGDI ELGIHVESCK NHYIDLFHIK ATAAKADVCY IISGVWKTPA 240 ERLFLWIGGF RPSEILRVLM PHLELLTEEQ HQSVSTLAQS CQQAEDALTQ GMLKLHQFLA 300 DTVSAGQLGE ENYLQQMHSA IEKLEHLIRF VNQADNLREL TLNQMSHFLT TRQAARGLLA 360 LGEYLQRLRT LSSLWANSPR EAA

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MNSTYTQFVA SKRMGICDPI HQLGMWGDFK GNGFATPSAA TMILEVEKSL DNPMPVIEKT  60
LDNQMEDMSH GSLGPSNKYE HEASKPIEKV LRRLAQNREA ARKSRLRKKA YVQQLESSKL  120
KLIQLEQELD RARQQGLYVS GGLDSSLLGY SGSPNSDLSP SLTEPAAITA FEMAYGHWVE  180
EQTRRINDLR NALHSQVGDI ELGIHVESCK NHYIDLFHIK ATAAKADVCY IISGVWKTPA  240
ERLFLWIGGF RPSEILRVLM PHLELLTEEQ HQSVSTLAQS CQQAEDALTQ GMLKLHQFLA  300
DTVSAGQLGE ENYLQQMHSA IEKLEHLIRF VNQADNLREL TLNQMSHFLT TRQAARGLLA  360
LGEYLQRLRT LSSLWANSPR EAA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00642	SELEX	Transfer from LOC107771743	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177286.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like isoform X1
Swissprot	P14232	1e-178	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A1J6HZ96	0.0	A0A1J6HZ96_NICAT; Tgacg-sequence-specific dna-binding protein tga-1a
STRING	XP_009593001.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-141	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]