PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000367.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 287aa    MW: 33359.8 Da    PI: 8.7897
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000367.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.61.9e-2446128186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              +W+ qe+++ + +r e++ ++ ++k++k lWe +++km+e+g++rs++qCk+kw+nl +ryk ++++e ++    ++++py+++l+
  Itr_sc000367.1_g00006.1  46 QWSIQETRDFLIIRAELDPTFMQTKRNKLLWEIIASKMKEKGYNRSAEQCKCKWKNLVTRYKGCETMEPEG---MRQQFPYYNELQ 128
                              7********************************************************************97...56679****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122033.49E-2445110No hitNo description
PfamPF138377.9E-2046129No hitNo description
PROSITE profilePS500907.20147103IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEGHHPPHHH PHQLHPQVSH LQYGGAVSVD AASVGGGSGV GDRFPQWSIQ ETRDFLIIRA  60
ELDPTFMQTK RNKLLWEIIA SKMKEKGYNR SAEQCKCKWK NLVTRYKGCE TMEPEGMRQQ  120
FPYYNELQTI FNARMQRMLW MEAEGGSSTG GSKKKAAMAL SSDEEEENEE SEGEAKSGRK  180
KRKVKGGGGG SGSGVANSLR EILEEFMKQQ MQMEAQWMKA VEAREEERRI KEMEWRRTME  240
ALENERVMME RRWREREEQR RAREEARAEK RDTLITALLN KLRREDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A1e-1243126386DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186130.11e-143PREDICTED: trihelix transcription factor GT-3b-like
SwissprotQ9SDW01e-71TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A4D9C6Y91e-119A0A4D9C6Y9_SALSN; Uncharacterized protein
STRINGXP_010264622.11e-115(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.13e-52Trihelix family protein