PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000362.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TALE

Protein Properties

Length: 718aa MW: 77324.3 Da PI: 6.52

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000362.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	412	449	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Itr_sc000362.1_g00009.1 412 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 449 554459******************************88 PP
2	BELL	82.1	7e-27	290	347	15	72
BELL 15 lleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++ +V++rY+qy++q++ vis Fe++ag gsa+ Yt++Al++iS++FrcLkdai +q+ Itr_sc000362.1_g00009.1 290 VMPKVEQRYRQYHQQMHFVISWFEQAAGPGSARTYTAVALQTISKQFRCLKDAILGQV 347 6678***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.7E-51	183	345	IPR006563	POX domain
Pfam	PF07526	4.7E-44	189	343	IPR006563	POX domain
PROSITE profile	PS50071	12.147	390	453	IPR001356	Homeobox domain
CDD	cd00086	5.37E-13	393	454	No hit	No description
SMART	SM00389	9.7E-10	393	457	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-17	394	459	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-28	396	459	IPR009057	Homeodomain-like
Pfam	PF05920	2.8E-18	410	449	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MATYFHGNSE IQGGGDGLQT LILMNPGYVN VGFSDTQPAA GTSFGFLNSI ASGNAVTLSH 60 APPQSQSQQF VGIPLAAAGS QEASVHSQHD IAALHGFIRS QYSNMYGPPP PPPVDISAAR 120 EVTRAQGGLS LSLSSQHGNF RAEGDAGSQQ MVTAAISPTS GDDQVRVSGG SSSSASGVSN 180 GVNGAQSRIL SSKYLKATQE LLEEVVNVGK GIKTGVESAK GANSQAKSLA GDSSGEGQGG 240 VESSSGNRTT ELTTAERQEI QMKKAKLVNM LDELKLLVEM EQILQFDITV MPKVEQRYRQ 300 YHQQMHFVIS WFEQAAGPGS ARTYTAVALQ TISKQFRCLK DAILGQVRAA SKSLGEDGVG 360 MKVEGSSRLK LVDNQLRQQR ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP 420 KDSDKIMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEIKEQEKSG GGAEDKTSKE 480 EADEEGSASL QQHKSPPGSE SQDRNDIDTP KQANNNNNNP SMSTASTTMD GIPMNTNHPA 540 GFSLIGPSEM DSITQGSPKK PRGSGSDMLL HSTIVPSIAI DAAKPATMKF GNDRQTREGF 600 PLEGSTNFMA AFGSYPIEEM GRFSTEQFPS PYSSNAVSLT LGLQHSENLS AAMSATHHNF 660 LPNQDIQMGR GVVIGEASND FVGGMTTPTS AHPTSVFENF NIQNRKRFPA QLLPDFVT

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MATYFHGNSE IQGGGDGLQT LILMNPGYVN VGFSDTQPAA GTSFGFLNSI ASGNAVTLSH  60
APPQSQSQQF VGIPLAAAGS QEASVHSQHD IAALHGFIRS QYSNMYGPPP PPPVDISAAR  120
EVTRAQGGLS LSLSSQHGNF RAEGDAGSQQ MVTAAISPTS GDDQVRVSGG SSSSASGVSN  180
GVNGAQSRIL SSKYLKATQE LLEEVVNVGK GIKTGVESAK GANSQAKSLA GDSSGEGQGG  240
VESSSGNRTT ELTTAERQEI QMKKAKLVNM LDELKLLVEM EQILQFDITV MPKVEQRYRQ  300
YHQQMHFVIS WFEQAAGPGS ARTYTAVALQ TISKQFRCLK DAILGQVRAA SKSLGEDGVG  360
MKVEGSSRLK LVDNQLRQQR ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP  420
KDSDKIMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEIKEQEKSG GGAEDKTSKE  480
EADEEGSASL QQHKSPPGSE SQDRNDIDTP KQANNNNNNP SMSTASTTMD GIPMNTNHPA  540
GFSLIGPSEM DSITQGSPKK PRGSGSDMLL HSTIVPSIAI DAAKPATMKF GNDRQTREGF  600
PLEGSTNFMA AFGSYPIEEM GRFSTEQFPS PYSSNAVSLT LGLQHSENLS AAMSATHHNF  660
LPNQDIQMGR GVVIGEASND FVGGMTTPTS AHPTSVFENF NIQNRKRFPA QLLPDFVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	7e-16	399	457	5	63	Homeobox protein Meis2
3k2a_B	7e-16	399	457	5	63	Homeobox protein Meis2
4xrs_A	5e-16	399	456	1	58	Homeobox protein Meis1
4xrs_B	5e-16	399	456	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019153693.1	0.0	PREDICTED: BEL1-like homeodomain protein 1 isoform X1
Refseq	XP_019153701.1	0.0	PREDICTED: BEL1-like homeodomain protein 1 isoform X1
Swissprot	Q9SJ56	1e-151	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A068UQ86	0.0	A0A068UQ86_COFCA; Uncharacterized protein
TrEMBL	A0A1S4ATV6	0.0	A0A1S4ATV6_TOBAC; BEL1-like homeodomain protein 1
TrEMBL	A0A1U7X9Z0	0.0	A0A1U7X9Z0_NICSY; BEL1-like homeodomain protein 1
STRING	XP_009628712.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-130	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]