PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000362.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 274aa    MW: 30213.4 Da    PI: 9.3922
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000362.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.61.1e-29143197258
                CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               p++VNaKQy++I++RR+ Rak+e e+kl  k rkpylh SRh hA+rRpRg+gGrF
  Itr_sc000362.1_g00001.1 143 GPIFVNAKQYHGIMRRRKCRAKAEMENKL--KPRKPYLHLSRHLHAVRRPRGCGGRF 197
                              69***************************..9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.5E-31140200IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115232.155141200IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-21144166IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-24144197IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860146166IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.4E-21174197IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSMTMQSVFS KEHEGIGQNP MVPWWSVAQP TAFVETLGHL KDASGNHKQG EGEGALEQSL  60
SKGIPPQFTV FSGNDTKFPQ VQATISVQPT STEYRGSFEL GFGQSVVCAK NPYSEQCYGV  120
YSAYGPQVAG RIMLPLNLSS DEGPIFVNAK QYHGIMRRRK CRAKAEMENK LKPRKPYLHL  180
SRHLHAVRRP RGCGGRFLNT KDVKGATGSK RKGSEVGSMF DREDPEDHRP HPINIHLHSS  240
LQALPDMMNT GHDFLMAGKW GVAAAADSCC NLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A4e-16142202264HAPB protein
4g92_A4e-16142202264HAPB protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153778.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X2
TrEMBLA0A2R6QVS92e-86A0A2R6QVS9_ACTCH; Nuclear transcription factor Y subunit A-10 like
STRINGPGSC0003DMT4000550618e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.25e-48nuclear factor Y, subunit A10