PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000361.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 123aa    MW: 14201.3 Da    PI: 8.0557
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000361.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.72.6e-4081071100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk lrr+C++dC++ pyfp ++p++f +vh++FGasnv k+l++++e+er d+++sl+yeA++r++dPvyG+vg+i+ l++q
  Itr_sc000361.1_g00020.1   8 RCAACKQLRRRCPSDCIFLPYFPPNDPQRFSYVHRIFGASNVAKMLQKVEEHERGDVAESLYYEAHCRIQDPVYGCVGIITILHEQ 93 
                              6************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              + + + +l+++++e
  Itr_sc000361.1_g00020.1  94 IYEFQCQLVKVEAE 107
                              ********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.8027108IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-408105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MSSSSNRRCA ACKQLRRRCP SDCIFLPYFP PNDPQRFSYV HRIFGASNVA KMLQKVEEHE  60
RGDVAESLYY EAHCRIQDPV YGCVGIITIL HEQIYEFQCQ LVKVEAEIQA VKARLGHLQP  120
QFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3611084111LOB family transfactor Ramosa2.1
5ly0_B3e-3611084111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184388.15e-78PREDICTED: LOB domain-containing protein 24-like
SwissprotP594681e-46LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A328EE467e-61A0A328EE46_9ASTE; Uncharacterized protein
TrEMBLA0A484MRQ47e-61A0A484MRQ4_9ASTE; Uncharacterized protein
STRINGXP_009589427.15e-60(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.15e-49LOB domain-containing protein 24