PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000360.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 893aa    MW: 97462.5 Da    PI: 6.7057
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000360.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH216.1e-07492512526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               Cr++++ G C+ G++CkF+H+
  Itr_sc000360.1_g00010.1 492 YCRHYQK-GRCQEGEKCKFSHD 512
                              6******.*************6 PP
2zf-CCCH17.95.6e-06546566525
                              --SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                              +C++f  +G+C++G  C F H
  Itr_sc000360.1_g00010.1 546 PCNNFVSNGFCSRGVDCLFLH 566
                              7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0037486513IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328487514IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6488512IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4491512IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4492512IPR000571Zinc finger, CCCH-type
SMARTSM003560.0094516542IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929516543IPR000571Zinc finger, CCCH-type
SMARTSM003560.4544568IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.206546569IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4546567IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MKITTGVSWK LLLKTSRGGT EGALWASTAM ENCSELDMAK PSQNAFHFPP PHRRRPLMGE  60
TYCTLIHILS HCPAGCEPQP SQQKQESGKE TTAHGGLVDQ HTEAEIKLVS DIDHEKNKSD  120
SIWQEMGDIS DGQIKDCIDL LDHIDDAMEV NGEVPQKNGG NNGISSSLVD HNQASTLVLQ  180
LYKEQEDKSN APEVHVGESD RVQLQNMDKK ISDYEACATI ESCFMDEDNE VSLLVQGSEE  240
KSHAAEKNLL EGIEHGLQLK EMELQNLISA SGAANSSVHD TVVEEIEEGE ISGDAGVSDE  300
SDSNMFEDTV SLEQGHAHVS ITAEKEFILD VLDTKLQEKH VQTSFSNDSA NGCSDVCKEL  360
LGKKSEVEKS DFEMVVCQKD VETKKIDGFD NVIHSEIVNG QVNGRNVDSF AACLPLKAVS  420
LENATKSTGS VTDTELEVAN EGKRKKKRDP ITKERRAKKK CKERIKRAQK NIKLGVKRLK  480
LPPIVKPKTV SYCRHYQKGR CQEGEKCKFS HDIIPLTKSK PCRHFARHSC MKGDDCPFDH  540
QLSKYPCNNF VSNGFCSRGV DCLFLHKVPA KTESSATSIV SKAELKSPLL PSSLSQKMQV  600
NAHGSSQLFP GKSTGHTVGE TVQKLAVRAP KGVSFLTHEK LPVRETDDKE LGSSLKEGDS  660
GKFNQEEIHS KLDNTRKPND VIKGPTSRIP QGINFLSFGR APLADPSSKT IIPNLLNKDY  720
RIGKSQLGEF SKGKDTTASS PSSGDSCRNE MTTGTPPKSM PRGLSLLSFD KVSSDVTSST  780
EQAIICNKEY KIASPVVQGI QGSLSRLGGS REIQFMFASS SFSSNQLLGQ SAVEHSEGLP  840
NSSKTTFLAN KPSSAQKSLL STLAFAAKFE SGIKLDQSIG GASVASSNIK EHR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173421.10.0PREDICTED: uncharacterized protein LOC109168999 isoform X1
TrEMBLA0A328DIK90.0A0A328DIK9_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720