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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Itr_sc000357.1_g00017.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
Dof |
| Protein Properties |
Length: 368aa MW: 38332.2 Da PI: 9.4894 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000357.1_g00017.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 123.3 | 8.2e-39 | 66 | 124 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s
Itr_sc000357.1_g00017.1 66 ETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRS 124
7789*****************************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MVFSSIPAYL DPANWQQLNH QVGTTTQVPS VPPAAAAPPP PHGSAGTIRP GSMADRARLA 60
NVPMPETALK CPRCESTNTK FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR 120
NKRSGKGGGG SSGGSGNNNK SPSNSSERQA SSSCSGVSTS SIMSGNSGGG LLGGPQIPPL 180
RFMSPLGQLS EHYPTGNDSI GLNINYSGLS AMAGRDNFPF QFGNNNNNNN NNNNNNNNNL 240
LGGGGGGGGL ASLLSGGIEQ WRLQTPILGG LDLSQPGLYQ FPGGSEAAPS GFLGGETSET 300
RPKFTSSSML TTQMASVKME DHNNNQESSM ARQLLGFQPG NDQWGSGGGA GWSDVSASFS 360
SSSTSNRL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:17583520, ECO:0000269|PubMed:30626969}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269|PubMed:30626969}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU171613 | 1e-106 | GU171613.1 Ipomoea batatas microsatellite Stv_Ipb_308 sequence. |
