PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000355.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 170aa MW: 18716.4 Da PI: 7.8092

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000355.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.5	2.7e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q Itr_sc000355.1_g00003.1 6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQEVPVKQRGDAVSSLVYEADARVRDPVYGCVGAISYLQNQ 91 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 ++ql+ +la++++e Itr_sc000355.1_g00003.1 92 VSQLQMQLAVAQAE 105 ********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.663	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MGGNSPCASC KLLRRRCAKD CIFAPYFPPD DPHKFAIVHK IFGASNVSKM LQEVPVKQRG 60 DAVSSLVYEA DARVRDPVYG CVGAISYLQN QVSQLQMQLA VAQAEILCIQ MNHQDPAPTF 120 PVDHQKSLLF SPETAAATAN FGTNLQQYLN FAPSSTAVMQ DPLKRESLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-48	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-48	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178528.1	1e-112	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-75	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A068ULU3	4e-90	A0A068ULU3_COFCA; Uncharacterized protein
STRING	VIT_06s0004g07200.t01	4e-88	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-78	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]