PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000343.1_g00019.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 317aa MW: 35178.1 Da PI: 4.9407

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000343.1_g00019.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90	1.9e-28	136	194	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s++ ++++tY+ eH h+ Itr_sc000343.1_g00019.1 136 EDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSNTAAGMFIVTYTAEHSHS 194 8************************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.6E-29	121	196	IPR003657	WRKY domain
PROSITE profile	PS50811	30.836	130	196	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-25	132	196	IPR003657	WRKY domain
SMART	SM00774	2.5E-34	135	195	IPR003657	WRKY domain
Pfam	PF03106	1.3E-24	136	193	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MGECIGFEDN WGLQAIVQPP LMASEFSCHD LFDFSQENVL NFDGFVGSAM VSNDALLEEL 60 YKPFYQPAAS ISFAGEVKQA EAAVHQILQK DGDVKKGSLD KSSPDLETPN YVPKFKRRKN 120 EHKRVVVQVP AEELCEDKWA WRKYGQKPIK GSPYPRSYYR CSSSKGCLAR KQVEQSNTAA 180 GMFIVTYTAE HSHSQPTRRN SLAGTIRNKF PPSTASKAVK VAEDSSTTAH HVPELVAAAS 240 ALSSPTDNNW RACSEEETKI KDEDDDEEEL ELGEKISLSD QIQSGMPPQV AMDNNTEDFF 300 ADHAAVITPN ESLNHSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-17	126	197	8	80	Disease resistance protein RRS1
5w3x_D	1e-17	126	197	8	80	Disease resistance protein RRS1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019151225.1	1e-157	PREDICTED: WRKY transcription factor 22-like isoform X1
Refseq	XP_019151226.1	1e-157	PREDICTED: WRKY transcription factor 22-like isoform X2
TrEMBL	A0A484KQQ4	8e-70	A0A484KQQ4_9ASTE; Uncharacterized protein
STRING	XP_009764282.1	6e-64	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5781	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	6e-32	WRKY DNA-binding protein 27