PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000327.1_g00036.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 397aa    MW: 44892.2 Da    PI: 5.8654
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000327.1_g00036.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind83.72.7e-265612623102
                              SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  23 engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                              ++g+sfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F +g++++l++i+rkk+
  Itr_sc000327.1_g00036.1  56 RSGHSFVVWDPHAFSTNLLPRFFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEAFVRGNRHMLKNIRRKKT 126
                              5789****************************************999.........**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-3632124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-2656124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.2E-2356124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.86E-2357124IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-97385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-98698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDLVYHVKEE YPGSSSSAGG GGGGGGGPPV IPPPQPMEGL HEIGPGAAAA AAEARRSGHS  60
FVVWDPHAFS TNLLPRFFKH NNFSSFVRQL NTYGFRKIDP ERWEFANEAF VRGNRHMLKN  120
IRRKKTPTSQ AVPAHAVGPC VEVGRFGIDA EVDGLRRDKQ VLMMELVKLR QQQQTTRAYL  180
RAMEQRLQGT ERKQQQMMNF LARAMQNPEF LQQLLAQKEK RRELEDAITK KRRRPIDQGP  240
SHSRAAAVKP EPLELSNGDP YGFQVSELEA LALEMQGFGR ARREIEEEND EHEFEQFQSE  300
SSYKELDEGF WQDFFNEGFD EALKEEGEEG DVNVLADRSL PEDEAQSRNG SCNWFSSSQI  360
LKPLGNIRQK ASIPDHEKTS FSGVFNSSYY LLMLIDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-165712942125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219233KRRELEDAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164752.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_019164760.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_019164768.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-108HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S3XUR11e-144A0A1S3XUR1_TOBAC; heat stress transcription factor A-7a-like isoform X1
STRINGXP_009631618.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-99heat shock transcription factor A6B