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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000324.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WRKY | ||||||||
Protein Properties | Length: 277aa MW: 31230.9 Da PI: 4.9288 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.5 | 5.1e-32 | 102 | 158 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYY+Ct ++C +kk+ver+++dp++++itYeg H h Itr_sc000324.1_g00014.1 102 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPKCGAKKQVERCSDDPDTLIITYEGLHLH 158 8******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.9E-31 | 90 | 158 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.313 | 96 | 161 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-27 | 97 | 158 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-36 | 101 | 160 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-26 | 102 | 158 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MAAHTEFMYP ESMMDAEELI QELLDDESPL FLAPQETIMK SSGFAGVSNY SLLNSLIYGH 60 ANQPLHDSRS CMLERGLMVS RDHHESKYTL RIKTNCGNAM ADDGYKWRKY GQKSIKNSPN 120 PRSYYKCTNP KCGAKKQVER CSDDPDTLII TYEGLHLHFA YPFFTLDNEP NKTIDLVPTK 180 KQKKTIAEEV VESQEQEQTN HVVYENNPGR EDTNPTTIVE WDSQGLLEDV VPLVIRRPST 240 ICNATTSYSS SSSFLSPPTS PSLSCSTNNC FLSDFDA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-22 | 92 | 158 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 9e-22 | 92 | 158 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019161473.1 | 1e-162 | PREDICTED: probable WRKY transcription factor 49 isoform X2 | ||||
TrEMBL | A0A314L5C8 | 1e-68 | A0A314L5C8_NICAT; Putative wrky transcription factor 49 | ||||
STRING | XP_009598015.1 | 8e-69 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12075 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 3e-41 | WRKY DNA-binding protein 49 |