PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000314.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 355aa    MW: 39822.7 Da    PI: 7.1396
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000314.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.69e-18143196356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Itr_sc000314.1_g00002.1 143 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 196
                              456899***********************************************9 PP
2HD-ZIP_I/II131.43.3e-42142234193
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++da+k+en++L++++++
  Itr_sc000314.1_g00002.1 142 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKRQFDAIKSENDALQAQNQK 227
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelke 93 
                              L++e+++
  Itr_sc000314.1_g00002.1 228 LHAEIMA 234
                              **99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.08E-19135200IPR009057Homeodomain-like
PROSITE profilePS5007117.329138198IPR001356Homeobox domain
SMARTSM003891.8E-17141202IPR001356Homeobox domain
CDDcd000866.89E-16143199No hitNo description
PfamPF000464.0E-15143196IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-18145205IPR009057Homeodomain-like
PRINTSPR000311.6E-5169178IPR000047Helix-turn-helix motif
PROSITE patternPS000270173196IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5178194IPR000047Helix-turn-helix motif
PfamPF021831.5E-16198238IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSTCIEMAFF PTNFMLQTPH EDDHQPSTSL NPLLPSCTPQ DFHGSLSLLS ISLSICVCVC  60
VYPHAQEPRG IAQWQKTGCG CGGQQIPRSE SRKKASTQIT VSRVASFLGK RSMSFSGVET  120
PNCEEAHGGE DDLSDDGSQA GEKKRRLNME QVKTLEKNFE LGNKLEPERK MQLARALGLQ  180
PRQIAIWFQN RRARWKTKQL EKDYEVLKRQ FDAIKSENDA LQAQNQKLHA EIMALKNRDH  240
QPTESINLNK ETEGSCSNRS ENSSEIKLDI SRPPAIDSHP PITPNTSRSL FPPNTLSRPA  300
GMAHLFHHNP SSSSRPPSSS DLHPQSVKEE TLSSMFCGID DQSGFWPWLE TQHFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190198RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164726.11e-172PREDICTED: homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC031e-101ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A484KQU91e-142A0A484KQU9_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000658051e-137(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.19e-99HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]