PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000311.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 481aa    MW: 51446.6 Da    PI: 7.7662
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000311.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.3e-162774148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+ Ed +l ++vk++G g+W+++ r  g+ R++k+c++rw ++l
  Itr_sc000311.1_g00016.1 27 KGPWTAAEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 74
                             79******************************************9986 PP
2Myb_DNA-binding51.81.8e-1680123146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +g++++eE+ l+v+++++lG++ W++ a+ ++ gRt++++k++w++
  Itr_sc000311.1_g00016.1  80 KGAFSPEEERLIVELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 123
                              799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.312274IPR017930Myb domain
SuperFamilySSF466897.11E-3025121IPR009057Homeodomain-like
SMARTSM007173.0E-132676IPR001005SANT/Myb domain
PfamPF002491.4E-142774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-232881IPR009057Homeodomain-like
CDDcd001674.01E-112974No hitNo description
PROSITE profilePS5129426.26975129IPR017930Myb domain
SMARTSM007174.8E-1679127IPR001005SANT/Myb domain
PfamPF002492.0E-1580123IPR001005SANT/Myb domain
CDDcd001677.88E-1282125No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2582128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAPDGGGMKN GGGSSGRTGG ARQMLKKGPW TAAEDAILME YVKKHGEGNW NAVQRNSGLM  60
RCGKSCRLRW ANHLRPNLRK GAFSPEEERL IVELHAKLGN KWARMAAQLP GRTDNEIKNY  120
WNTRLKRRQR AGLPIYPQEI QPQNAYHHPN QILIQQTRSS RSSSPLSALL SAPPPPHHLP  180
KPAAPYNPPP SIYDHMFDSP ATLKSAPAAT LQGHGSHFKF FSAPPGGLAL TLAASSNKPG  240
QFSSPVTPPL PKHFNAPLPI PSLPFSALHP FSAVFGGPAG ANMQERPSIQ TPVPAATPTT  300
SSGITGSLYP APSDDANDYE VLPGLPRSNS GLLEDLLHES HALARDVEKI NKDSSDGKGK  360
QKSTSDEYEA LLGNPTPPSV HEQAVYSFGY EGESASVKET NSPVDDDILS LLDNFPLAVP  420
VPDWYEDGKG GGDLVNGGAF NTMQDGGGAT GVVGNHKEES KSSSTTTSEA TLCWNNMPCI  480
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30251285107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194299.10.0PREDICTED: transcription factor GAMYB
TrEMBLA0A328DD541e-134A0A328DD54_9ASTE; Uncharacterized protein
STRINGXP_009781770.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.22e-72myb domain protein 101