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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000308.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 453aa MW: 50461.1 Da PI: 4.9798 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 101.4 | 1.3e-31 | 292 | 408 | 1 | 120 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lL+ cA+av+ +d + a+++L+r+++++s++gd mqRla+yf+ +L+ar+a+s++++ykal + +++l+a++l+ Itr_sc000308.1_g00011.1 292 LRSLLMLCAQAVAVEDIRTANEYLKRIRQHSSQTGDDMQRLAHYFADGLEARIAGSGTRIYKALMKYPRY---AARALKAFQLYCS 374 6899************************************************************988887...899********** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdis 120 +P+lk+s+l N++I +++++ +HiiDf+i+ Itr_sc000308.1_g00011.1 375 SCPFLKISYLFSNKTITTLAQNASSLHIIDFGIG 408 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.38 | 266 | 453 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.6E-29 | 292 | 408 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MANEGVCETL VDRNEEMGNL NSEEAPLPQS HQSLLNEDYD LRDQMLKWIN QMLMEDNAEE 60 KAYMFRQSAA LKDAERSFYE LIGEDYPPSP NLQRVPDLDR NENYGNDDSL CPNRDPYPRD 120 RQTTSDHVAS STTFQSSSLL GQGTVNDGTV DFAASSITIP DLSNCTESVE KGVREASSFL 180 PTRNSLLVDG IGAEKNTGNQ DTLEGQRGTK NTLREDTHLA EGRSYKQSAI YAEPSIKQEE 240 FDKVLLWSGE DESSLCHSLR GVLCEGNDDS KGSNRKKSSG KKPGSERTVV DLRSLLMLCA 300 QAVAVEDIRT ANEYLKRIRQ HSSQTGDDMQ RLAHYFADGL EARIAGSGTR IYKALMKYPR 360 YAARALKAFQ LYCSSCPFLK ISYLFSNKTI TTLAQNASSL HIIDFGIGAR HFRAFVVETS 420 LVQITHQTSN LLVSDEGNPQ SLCKGVYWVN PAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-11 | 299 | 407 | 26 | 137 | Protein SCARECROW |
5b3h_A | 2e-11 | 299 | 407 | 25 | 136 | Protein SCARECROW |
5b3h_D | 2e-11 | 299 | 407 | 25 | 136 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019171941.1 | 0.0 | PREDICTED: scarecrow-like protein 14 isoform X2 | ||||
TrEMBL | A0A1U8GLI8 | 1e-111 | A0A1U8GLI8_CAPAN; scarecrow-like protein 14 | ||||
TrEMBL | A0A1U8GTL4 | 1e-111 | A0A1U8GTL4_CAPAN; Scarecrow-like protein 14 | ||||
STRING | PGSC0003DMT400016258 | 1e-107 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 4e-59 | GRAS family protein |