PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000308.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 635aa    MW: 71856.6 Da    PI: 6.2159
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000308.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS129.73.3e-402904301142
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL+ cA+av+ +d + a+ +L+r+++++s++gd mqRla+yf+eAL+ar+++s++++ykal   +      +++l+a++l+  
  Itr_sc000308.1_g00010.1 290 LRSLLTLCAQAVAVQDIRTANDYLKRIRQHSSQTGDDMQRLAHYFAEALEARITGSGTRIYKALMKYPRY---AARALKAFQLYRS 372
                              6899************************************************************988887...899********** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppsl 142
                               +P+lk+s+l  N++I   +++++ +Hii f+i+   G+QWp+L+q L+sRp+gpp+l
  Itr_sc000308.1_g00010.1 373 SCPFLKISYLFSNKTITTLAQNASSLHIIHFGIGflFGFQWPCLIQHLSSRPGGPPKL 430
                              *********************************8446*******************97 PP
2GRAS132.74e-41432597184347
                     GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                              k++e++++++L++ +gE+l+Vn+++ql ++ld++v ++s  +rd+vLkl+ ++ P+v+++   ++ +ns+ F  rf  al++ysa+
  Itr_sc000308.1_g00010.1 432 KQWETITVDDLKIIEGEVLVVNCIYQLRKVLDDTVVVNSlsPRDTVLKLIHEVHPDVFIHGILNSACNSPLFTSRFRAALSHYSAV 517
                              6899*******************************999998********************************************* PP

                     GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                              fd+le+++pre +er+ +E  ++g++++nv+ace +er+er et++ W++r ++aGF ++pl+ +++k   + l++++++
  Itr_sc000308.1_g00010.1 518 FDMLEVTIPREVHERMLIESYIFGQQAMNVIACEDTERVERPETYKMWQARNTRAGFLQLPLNREIVKMSMHTLKRYHKE 597
                              ************************************************************************99999965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.133264604IPR005202Transcription factor GRAS
PfamPF035141.2E-37290430IPR005202Transcription factor GRAS
PfamPF035141.4E-38432597IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MANEGVYETL VDQNEEMGNL NSEEAPLPQS GQRLNVVNLL NEDGGYEDYD LKGQMLKWIN  60
QILMEDNVEE KAYMSRQSTA LKDAERSFYE LIGEEYPRSP NLHRVPDLDR NDNIGSGDNG  120
NDDSLCPNLD PNPRERQTTS DHVPVNVASS TITIPDISNC TESVEKGVRE ASWFLPTRNS  180
LLVDGVGAEK NTGNQDALEG RRGTKNTLRE DTHLPEGRSY KQSAIYAEPS IKQEEFDKVL  240
LSSGEDESSL CHSLRGVLCE SATGNDDSKG SNRKKSSGKK LGSERTLVDL RSLLTLCAQA  300
VAVQDIRTAN DYLKRIRQHS SQTGDDMQRL AHYFAEALEA RITGSGTRIY KALMKYPRYA  360
ARALKAFQLY RSSCPFLKIS YLFSNKTITT LAQNASSLHI IHFGIGFLFG FQWPCLIQHL  420
SSRPGGPPKL PKQWETITVD DLKIIEGEVL VVNCIYQLRK VLDDTVVVNS LSPRDTVLKL  480
IHEVHPDVFI HGILNSACNS PLFTSRFRAA LSHYSAVFDM LEVTIPREVH ERMLIESYIF  540
GQQAMNVIAC EDTERVERPE TYKMWQARNT RAGFLQLPLN REIVKMSMHT LKRYHKEXXX  600
XXXXXXXXXX XXXXXXXXXX XXXYVEAIPQ GVRDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-262905805329GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171940.10.0PREDICTED: scarecrow-like protein 33 isoform X1
TrEMBLA0A1S4D6550.0A0A1S4D655_TOBAC; scarecrow-like protein 14
STRINGXP_009611175.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-105GRAS family protein