PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000308.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 668aa MW: 75554.4 Da PI: 6.4175

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000308.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355.6	7.5e-109	292	666	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lL+ cA+av+ +d + a+ +L+r+++++s++gd mqRla+yf+ +L+ar+a+s++++ kal + +++l+a+kl+ Itr_sc000308.1_g00009.1 292 LRSLLMLCAQAVAVEDIRTANDYLKRIRQHSSQTGDDMQRLAHYFADGLEARIAGSGTRIHKALVKYPRY---AARALKAFKLYLS 374 6899**********************************************************999988...89******* PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 ++P+ k+s++ N++I +++++ +HiiDf+i+ G+QWp+L+q L+sRp+gpp+lRiTg++ p sg +e+ e tg+ La + Itr_sc000308.1_g00009.1 375 CCPFRKISNMFSNKTITILAQNASSLHIIDFGIGtlFGFQWPCLIQHLSSRPGGPPKLRITGIDFPLSGfrPAERAEGTGRLLAYY 460 *****************************8446*************************99999*********** PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnses 252 Ae+++vpfefn+ +ak++e++++e+L++ +gE+laVn+ ++l +llde+v ++s +rd+vLkl+ +++P+v+++ ++ +n++ Itr_sc000308.1_g00009.1 461 AEKFNVPFEFNA-IAKQWETITVEDLKIIEGEVLAVNCLYRLRNLLDETVVVNSlnPRDTVLKLIHDVRPDVFIHGILNSACNAPF 545 ********.7********************************9999989************************* PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 F rf al++ys++fd+lea++pre er+ +E ++g++++n++ace +er+er et++kW++r ++aGF ++pl+ +++k Itr_sc000308.1_g00009.1 546 FTSRFRVALSHYSTVFDMLEATIPREVPERMLIESYIFGQQAMNAIACEDTERVERPETYKKWQARNTRAGFLQLPLNREIVKMSV 631 ********************************************************************************** PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++l++++++ + ++e+ ++l+lgWk+r+L+++S+W+ Itr_sc000308.1_g00009.1 632 HMLKRYHKE-FVIDEDGHWLLLGWKGRALFALSSWK 666 ***55.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.906	266	647	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-106	292	666	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MDRGPYETTS QFNFEGEYEH YDLRDQMLKW INQMLMEDNV EEKAYMSRQS AALKDAERSF 60 YELIGEEYPP SPNLHRVPDL DRNENYGGSG YYGSGDNGND DSLCPNWVPN PRDRQTTSDH 120 VPVNVALSTT SQPSSLLGQG TVNDGTVDFV ASTITIPDIS NFTESVEKGI REGSSFLPTR 180 NSLLVDGVGA EKNTGSQDLL EGRRGKKNMC RDDMHLPEGR FYKQSAIYAE PSIKQEEFDE 240 VLLCSEEDES NLCHSLRNVS CESATGNDES KGSNRKKSSG KKPWSNQAVV DLRSLLMLCA 300 QAVAVEDIRT ANDYLKRIRQ HSSQTGDDMQ RLAHYFADGL EARIAGSGTR IHKALVKYPR 360 YAARALKAFK LYLSCCPFRK ISNMFSNKTI TILAQNASSL HIIDFGIGTL FGFQWPCLIQ 420 HLSSRPGGPP KLRITGIDFP LSGFRPAERA EGTGRLLAYY AEKFNVPFEF NAIAKQWETI 480 TVEDLKIIEG EVLAVNCLYR LRNLLDETVV VNSLNPRDTV LKLIHDVRPD VFIHGILNSA 540 CNAPFFTSRF RVALSHYSTV FDMLEATIPR EVPERMLIES YIFGQQAMNA IACEDTERVE 600 RPETYKKWQA RNTRAGFLQL PLNREIVKMS VHMLKRYHKE FVIDEDGHWL LLGWKGRALF 660 ALSSWKPA

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MDRGPYETTS QFNFEGEYEH YDLRDQMLKW INQMLMEDNV EEKAYMSRQS AALKDAERSF  60
YELIGEEYPP SPNLHRVPDL DRNENYGGSG YYGSGDNGND DSLCPNWVPN PRDRQTTSDH  120
VPVNVALSTT SQPSSLLGQG TVNDGTVDFV ASTITIPDIS NFTESVEKGI REGSSFLPTR  180
NSLLVDGVGA EKNTGSQDLL EGRRGKKNMC RDDMHLPEGR FYKQSAIYAE PSIKQEEFDE  240
VLLCSEEDES NLCHSLRNVS CESATGNDES KGSNRKKSSG KKPWSNQAVV DLRSLLMLCA  300
QAVAVEDIRT ANDYLKRIRQ HSSQTGDDMQ RLAHYFADGL EARIAGSGTR IHKALVKYPR  360
YAARALKAFK LYLSCCPFRK ISNMFSNKTI TILAQNASSL HIIDFGIGTL FGFQWPCLIQ  420
HLSSRPGGPP KLRITGIDFP LSGFRPAERA EGTGRLLAYY AEKFNVPFEF NAIAKQWETI  480
TVEDLKIIEG EVLAVNCLYR LRNLLDETVV VNSLNPRDTV LKLIHDVRPD VFIHGILNSA  540
CNAPFFTSRF RVALSHYSTV FDMLEATIPR EVPERMLIES YIFGQQAMNA IACEDTERVE  600
RPETYKKWQA RNTRAGFLQL PLNREIVKMS VHMLKRYHKE FVIDEDGHWL LLGWKGRALF  660
ALSSWKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-46	296	666	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171942.1	0.0	PREDICTED: scarecrow-like protein 14 isoform X3
TrEMBL	A0A1U8GLI8	0.0	A0A1U8GLI8_CAPAN; scarecrow-like protein 14
TrEMBL	A0A1U8GTL4	0.0	A0A1U8GTL4_CAPAN; Scarecrow-like protein 14
STRING	XP_009611175.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-168	GRAS family protein