PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CAMTA

Protein Properties

Length: 911aa MW: 103145 Da PI: 7.5426

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000300.1_g00043.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161.4	1.6e-50	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 +e ++rwl+++ei+aiL n++ ++++ + + pk g++ L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah Itr_sc000300.1_g00043.1 30 DEaRTRWLRPNEIHAILCNYKYFTVHVRPVNLPKGGTVTLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNDERIHVYYAH 115 4559******************************************************************************** PP CG-1 88 seenptfqrrcywlLeeelekivlvhylevk 118 +e+nptf rrcywlL+++le+ivlvhy+e++ Itr_sc000300.1_g00043.1 116 GEDNPTFVRRCYWLLDKTLEHIVLVHYRETQ 146 **************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.25	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.6E-71	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.9E-45	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.08E-15	360	447	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:2.60.40.10	4.7E-5	360	440	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.2E-4	361	445	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	1.4E-16	541	659	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.51E-17	544	660	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.20E-16	546	656	No hit	No description
Pfam	PF12796	5.0E-7	547	625	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.247	555	668	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.087	597	629	IPR002110	Ankyrin repeat
SMART	SM00248	4.1E-5	597	626	IPR002110	Ankyrin repeat
SMART	SM00015	440	705	729	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	7.17E-5	709	809	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.705	743	769	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	25	758	780	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.309	759	788	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.2E-4	781	803	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.347	782	806	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.6E-4	783	803	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	9.5	864	886	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.736	866	894	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 911 aa Download sequence Send to blast
MDYGVPVLLA GSDIHGFHTL EDLDVKTVMD EARTRWLRPN EIHAILCNYK YFTVHVRPVN 60 LPKGGTVTLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNDERIH VYYAHGEDNP 120 TFVRRCYWLL DKTLEHIVLV HYRETQEVQS SPATPSSALS DLSPPWGLTE GSESTIDCAN 180 YNRPPASLEP NDNMRIQNHR QTLHAINTLE WEELLEPDDP NNSRSAKASG GQQQQYETNG 240 FRLNVDNLSA DKLAVGPLEN LPGQMSISNS INFNIPNDVV PQTLNAQMTS YSQRIDFDNP 300 SKDGLQSQDS FGKWINYMIA ADSPGSVDDP SLEPATLPGY QSFPSPSLDN KSSAQEHIFN 360 ITDVSPAWAF STEETKILVI GHFLGGQSQL AISNLFCVCG DTPVPAEVIQ SGVYRCLLSP 420 QTPGLVSLYL SFDGYNPISQ VITFEFRAPE MPKSTTTPSV VKHHWEELRA QMRLAHLLFA 480 TPKSLNILSS KIPQDAQKGA KIFAHKCSHI TSNWTNLTKS IDNNEFSFPQ AKDQLFELSL 540 HTKLQEWLLE RILEGCKIPE RDEQGQSVIH LCAILGYTWA IYPYKWSGLS LDYRDKFGWT 600 ALHWAAYYGR EKMVAVLLSA GAKPSMVTDP SSENPSGCTA ADLASKNGYE GLGAYLAEKA 660 LVAQFNDMTL AGNASGSLQP ASDSGNYGNI DEDMELKDTL AAYRTAADAA ARIQSAFREH 720 SFKLRKQQVE TSTPESEARS IIAAMKIQHA FRKYDSRKKI AAAARIQYRF RTWKIRKDFL 780 NMRRQATKIQ SVFRGYQVRR QYRKIVWSVG VLEKAILRWR LKRKGFRGLQ VAETTDTTEN 840 QKQDNDVVVE EDFFRASAFV RLERVERAVV RVQAMFRSKK AQEEYRRMKL EHNTASLEYE 900 EFLDPTDTYM G

Sequence ? help Back to Top

Protein Sequence Length: 911 aa Download sequence Send to blast

MDYGVPVLLA GSDIHGFHTL EDLDVKTVMD EARTRWLRPN EIHAILCNYK YFTVHVRPVN  60
LPKGGTVTLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNDERIH VYYAHGEDNP  120
TFVRRCYWLL DKTLEHIVLV HYRETQEVQS SPATPSSALS DLSPPWGLTE GSESTIDCAN  180
YNRPPASLEP NDNMRIQNHR QTLHAINTLE WEELLEPDDP NNSRSAKASG GQQQQYETNG  240
FRLNVDNLSA DKLAVGPLEN LPGQMSISNS INFNIPNDVV PQTLNAQMTS YSQRIDFDNP  300
SKDGLQSQDS FGKWINYMIA ADSPGSVDDP SLEPATLPGY QSFPSPSLDN KSSAQEHIFN  360
ITDVSPAWAF STEETKILVI GHFLGGQSQL AISNLFCVCG DTPVPAEVIQ SGVYRCLLSP  420
QTPGLVSLYL SFDGYNPISQ VITFEFRAPE MPKSTTTPSV VKHHWEELRA QMRLAHLLFA  480
TPKSLNILSS KIPQDAQKGA KIFAHKCSHI TSNWTNLTKS IDNNEFSFPQ AKDQLFELSL  540
HTKLQEWLLE RILEGCKIPE RDEQGQSVIH LCAILGYTWA IYPYKWSGLS LDYRDKFGWT  600
ALHWAAYYGR EKMVAVLLSA GAKPSMVTDP SSENPSGCTA ADLASKNGYE GLGAYLAEKA  660
LVAQFNDMTL AGNASGSLQP ASDSGNYGNI DEDMELKDTL AAYRTAADAA ARIQSAFREH  720
SFKLRKQQVE TSTPESEARS IIAAMKIQHA FRKYDSRKKI AAAARIQYRF RTWKIRKDFL  780
NMRRQATKIQ SVFRGYQVRR QYRKIVWSVG VLEKAILRWR LKRKGFRGLQ VAETTDTTEN  840
QKQDNDVVVE EDFFRASAFV RLERVERAVV RVQAMFRSKK AQEEYRRMKL EHNTASLEYE  900
EFLDPTDTYM G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	88	RKKLRNFRKDGHNWKKKK
2	72	87	KKLRNFRKDGHNWKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174566.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A328DP12	0.0	A0A328DP12_9ASTE; Uncharacterized protein
STRING	XP_009609050.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]