PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000297.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WRKY | ||||||||
Protein Properties | Length: 353aa MW: 39146.1 Da PI: 7.0774 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.1 | 3.8e-33 | 198 | 255 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers edp++v++tYeg+Hnh+ Itr_sc000297.1_g00008.1 198 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCTVKKRVERSYEDPTIVVTTYEGQHNHH 255 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-34 | 182 | 257 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-29 | 189 | 257 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.927 | 192 | 257 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-38 | 197 | 256 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.1E-26 | 198 | 255 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MGSGRINTFP FFGDDNSDHH NPSSSIYSSS DHHPPPSAPT QNLLHQEFLP SPFMSFTESL 60 QGSMDYHTLS NAFGMSCSSS EVVCTPTDHH HHHHQQQQQQ NQESSRKSSV SAGEAAGENI 120 PFVAANSSVS SSSSEAAVGD REEDSSKSNK DLLLPKGCED GDDKSTKINK GAAKKKGEKK 180 QREPRFAFMT KSEIDNLEDG YRWRKYGQKA VKNSPFPRSY YRCTSQKCTV KKRVERSYED 240 PTIVVTTYEG QHNHHCPATL RGNAVALLSP ASFLSPSPAA LMPNFHQDLL LNPMLSGGAP 300 NFQPSSMYGG YHHHHLGLNP HHYDHQITQS PVDQYTLFQD MVVSSLGHKQ EHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-28 | 187 | 258 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-28 | 187 | 258 | 7 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019193556.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
Swissprot | Q8VWJ2 | 5e-52 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A328DQY2 | 1e-111 | A0A328DQY2_9ASTE; Uncharacterized protein | ||||
STRING | XP_009766292.1 | 4e-98 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 2e-47 | WRKY DNA-binding protein 28 |
Publications ? help Back to Top | |||
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