PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000296.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 708aa    MW: 77040.2 Da    PI: 6.5142
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000296.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.57.1e-29221274155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Itr_sc000296.1_g00017.1 221 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVDGLTRENVASHLQKYRL 274
                              79*******************.********************************8 PP
2Response_reg59.61.7e-20261471109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHT........TTSEEE CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reee........pklpii 75 
                              vl vdD+p+ ++ll+++l+k +y +v+ +++++ al++l+e++  +Dl++ D+ mp+mdG++ll+    e +        + +p  
  Itr_sc000296.1_g00017.1  26 VLAVDDDPICLKLLESLLRKCQY-HVTITSQARMALKMLRENRerFDLVISDVHMPDMDGFKLLELVgLEMDlpvinlriDPIPLK 110
                              799********************.***************998889*******************9996665564433332223332 PP

                              ...EEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  76 ...vvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                 v++a+++ +++ + +  Ga d+l+Kp+ +eel++
  Itr_sc000296.1_g00017.1 111 ffsVLSANSDTKLVMKGITHGACDYLVKPVRIEELRN 147
                              333788999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.4E-1601707IPR017053Response regulator B-type, plant
SuperFamilySSF521729.82E-3023160IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.6E-3923173No hitNo description
SMARTSM004483.0E-2624149IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.77225153IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.1E-1826148IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.44E-2527153No hitNo description
PROSITE profilePS5129412.831218277IPR017930Myb domain
SuperFamilySSF466891.15E-19218278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-30218279IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24221274IPR006447Myb domain, plants
PfamPF002495.2E-6223273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MTVEEIRGHM GGEKGNHDSF PVGMRVLAVD DDPICLKLLE SLLRKCQYHV TITSQARMAL  60
KMLRENRERF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI NLRIDPIPLK FFSVLSANSD  120
TKLVMKGITH GACDYLVKPV RIEELRNIWQ HVIRRKKFDS KSQNKSGDQD RSPNGGGEGG  180
QGGPLSGSTE QNGKLNKKRK DEEDESDENG HENEDPATQK KPRVVWSIEL HRKFVAAVNQ  240
LGIEKAVPKR ILDLMNVDGL TRENVASHLQ KYRLYLKRIS SVATQQANMV AAFGGKDSAY  300
MRMGSLDGLG DFRTLAGSGR FSHASLSSYT PGGMLGRLNS AAGVSIRNLT SPSLIQPSHG  360
QNLGKPLGTL GKLTPNVPAV SQNACLFQGI PSSLELDQFQ QSEGTPHIRG DLNPLDDSTL  420
LGAANTFTDP GSGIGSSSNP MMLHGNSQQG LMAGGIGNQH SLNMASLNSE HFNIGVGGSS  480
NFLDHGRSSD NWQNPIQVTN FQSSSLPLTE TFNQGQMQQN CARENNSSIG PHLQGGCAGY  540
SSLASTATPF EDSRGEIQRR ERLVGDAIPS INQVPSQQWG ELKQNPNSNG VYSNLTAQVP  600
ASSIVPPLSQ SMDQCNDTGN RRIDASGQSN LGSSVLLQHN KNEKLTSESR ARYYEDYLFE  660
PPKPQGAFPS QGYGSLDDLM SSVIKREQDG ATLEGEFGFD AYSFGPCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-26219280364ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181977.10.0PREDICTED: two-component response regulator ARR12-like isoform X1
TrEMBLM0ZUD30.0M0ZUD3_SOLTU; Two-component response regulator
STRINGXP_009795713.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-117response regulator 12