PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000295.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 427aa MW: 48104.6 Da PI: 8.8583

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000295.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.8	6.6e-19	32	123	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt++e+laLiea+re++ +lrrg l+ ++W++v++ + + +++ qC++k+e+l++ry+++k+++ + + + s++ + Itr_sc000295.1_g00004.1 32 CWTQEETLALIEAYRERWYALRRGYLRTADWDSVAETVvsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSYpAGRFFSNWFF 117 8*********************************9988777777789999***************99986678889 PP trihelix 82 fdqlea 87 f++++a Itr_sc000295.1_g00004.1 118 FENMDA 123 9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-19	31	124	No hit	No description
PROSITE profile	PS50090	7.05	33	93	IPR017877	Myb-like domain
SMART	SM00595	2.1E-9	40	129	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MSSTTEAAPE AGMEELVAVV EEKPGRKFPA PCWTQEETLA LIEAYRERWY ALRRGYLRTA 60 DWDSVAETVV SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLSYPAGR FFSNWFFFEN 120 MDAMENGTVV SAARSNQEPD KQTISGNAFG LKTLIDQNIL KLKLNPTKLT KSIEDSNPNF 180 GFDQEITPKN FGARVPNGYL SYLDVAASKK EQVDVLHLET PFGMKTRIDG IPIPIGFKPK 240 RSSFNGELKN GFDVVNKEMG KLDRGMNSNL SEYNGINPSE EYIMRVLADR NSSVHVRGNN 300 GGGAMEDSNH DMGVSSNRFL SSSLPRVGKK MSDGSSGVGC KRERNSVDSV DQIAASIRFL 360 GEGFMKIEKM KMEMAKEIEQ MRMEREMKQS QMILESQKQM VDCFMKVLSE LKNSKKAKKT 420 GEHEQES

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MSSTTEAAPE AGMEELVAVV EEKPGRKFPA PCWTQEETLA LIEAYRERWY ALRRGYLRTA  60
DWDSVAETVV SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLSYPAGR FFSNWFFFEN  120
MDAMENGTVV SAARSNQEPD KQTISGNAFG LKTLIDQNIL KLKLNPTKLT KSIEDSNPNF  180
GFDQEITPKN FGARVPNGYL SYLDVAASKK EQVDVLHLET PFGMKTRIDG IPIPIGFKPK  240
RSSFNGELKN GFDVVNKEMG KLDRGMNSNL SEYNGINPSE EYIMRVLADR NSSVHVRGNN  300
GGGAMEDSNH DMGVSSNRFL SSSLPRVGKK MSDGSSGVGC KRERNSVDSV DQIAASIRFL  360
GEGFMKIEKM KMEMAKEIEQ MRMEREMKQS QMILESQKQM VDCFMKVLSE LKNSKKAKKT  420
GEHEQES

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019179671.1	0.0	PREDICTED: uncharacterized protein LOC109174886
TrEMBL	A0A484MAA3	1e-179	A0A484MAA3_9ASTE; Uncharacterized protein
STRING	Solyc08g007170.1.1	1e-108	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12774	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-39	Trihelix family protein