 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Itr_sc000289.1_g00010.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
HSF |
| Protein Properties |
Length: 345aa MW: 38712.7 Da PI: 7.9793 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000289.1_g00010.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 115.4 | 3.6e-36 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87
Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv ++ weF+++ Fk
Itr_sc000289.1_g00010.1 25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANEFFK 101
9*****************************************************************99.........********* PP
XXXXXXXXXXXXXXXX CS
HSF_DNA-bind 88 kgkkellekikrkkse 103
+g+k+ll++i+r+k++
Itr_sc000289.1_g00010.1 102 RGEKHLLCEIHRRKTA 117
*************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008356 | Biological Process | asymmetric cell division |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042802 | Molecular Function | identical protein binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA 60
RDLLPNYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANEFF KRGEKHLLCE IHRRKTAQPQ 120
VAVSHHHHHH AMNEPSFFSA YNPARLSVSP PDSDEPLTPH NNNAWCDSPS FASSTVISAA 180
NSGGGASYNT GSVAALSEDN VRLRRSNNML MSELAHMRKL YNDIIYFVQN HVKPVTPSNS 240
YPSPLTHQKP PSQLVTYPHP HLPTKHQPCN NAIFNLSSPT KTSQSSVTLV EEAPAPDLCR 300
TKLFGFPLQS KKRLHPDQAA AAGHKARVLV LEKDDLALHL MPPSC
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 3e-22 | 20 | 117 | 16 | 123 | Heat shock factor protein 1 |
| 5d5u_B | 3e-22 | 20 | 116 | 25 | 131 | Heat shock factor protein 1 |
| 5d5v_B | 3e-22 | 20 | 116 | 25 | 131 | Heat shock factor protein 1 |
| 5d5v_D | 3e-22 | 20 | 116 | 25 | 131 | Heat shock factor protein 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
