PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000287.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 267aa    MW: 29472.5 Da    PI: 9.9191
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000287.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.6e-18122176256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+++++k+q   Le+ F+++ +++  ++++LA++l+L  rqV vWFqNrRa+ k
  Itr_sc000287.1_g00009.1 122 RKKHRLSKSQSALLEQSFRQHTTLNPVQKQQLARELNLRPRQVEVWFQNRRARTK 176
                              78899************************************************98 PP
2HD-ZIP_I/II119.51.8e-38122211191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rlsk q++lLE+sF+++++L+p +K++lareL+l+prqv+vWFqnrRARtk+kq+E dye Lk+++++l++en+rL+kev+e
  Itr_sc000287.1_g00009.1 122 RKKHRLSKSQSALLEQSFRQHTTLNPVQKQQLARELNLRPRQVEVWFQNRRARTKLKQIEADYELLKKCCQTLTDENRRLKKEVQE 207
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              L+ +l
  Itr_sc000287.1_g00009.1 208 LK-AL 211
                              *9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-18117180IPR009057Homeodomain-like
PROSITE profilePS5007116.665118178IPR001356Homeobox domain
SMARTSM003891.1E-14120182IPR001356Homeobox domain
PfamPF000463.4E-15122176IPR001356Homeobox domain
CDDcd000866.70E-16122179No hitNo description
Gene3DG3DSA:1.10.10.601.1E-16122176IPR009057Homeodomain-like
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PfamPF021834.6E-9178212IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.7E-18178221IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MASSHQKNIC STDLTLALGL GFASSSSSSS YNNHLPYISK PKTPMSSSGL NLSLSCETSD  60
HVMNKVSAAG LCRQDSSTSS YQSNATPAKR EREIIGVNNS KAASRMLIIS DEEEYDDGCN  120
IRKKHRLSKS QSALLEQSFR QHTTLNPVQK QQLARELNLR PRQVEVWFQN RRARTKLKQI  180
EADYELLKKC CQTLTDENRR LKKEVQELKA LKLMKPSLYM QAAALTNCPS CSGGGHGGAA  240
CKTKTKTSFT LAPIPHFYNP VTSPSAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170178RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182808.11e-135PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466049e-65HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A4D8YV985e-82A0A4D8YV98_SALSN; Homeobox-leucine zipper protein
STRINGVIT_00s0732g00010.t012e-73(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-63HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]