PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000287.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 267aa MW: 29472.5 Da PI: 9.9191

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000287.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.6e-18	122	176	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+++++k+q Le+ F+++ +++ ++++LA++l+L rqV vWFqNrRa+ k Itr_sc000287.1_g00009.1 122 RKKHRLSKSQSALLEQSFRQHTTLNPVQKQQLARELNLRPRQVEVWFQNRRARTK 176 78899************************************************98 PP
2	HD-ZIP_I/II	119.5	1.8e-38	122	211	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rlsk q++lLE+sF+++++L+p +K++lareL+l+prqv+vWFqnrRARtk+kq+E dye Lk+++++l++en+rL+kev+e Itr_sc000287.1_g00009.1 122 RKKHRLSKSQSALLEQSFRQHTTLNPVQKQQLARELNLRPRQVEVWFQNRRARTKLKQIEADYELLKKCCQTLTDENRRLKKEVQE 207 69************************************************************************************ PP HD-ZIP_I/II 87 Lreel 91 L+ +l Itr_sc000287.1_g00009.1 208 LK-AL 211 *9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.13E-18	117	180	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.665	118	178	IPR001356	Homeobox domain
SMART	SM00389	1.1E-14	120	182	IPR001356	Homeobox domain
Pfam	PF00046	3.4E-15	122	176	IPR001356	Homeobox domain
CDD	cd00086	6.70E-16	122	179	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-16	122	176	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	153	176	IPR017970	Homeobox, conserved site
Pfam	PF02183	4.6E-9	178	212	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	4.7E-18	178	221	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MASSHQKNIC STDLTLALGL GFASSSSSSS YNNHLPYISK PKTPMSSSGL NLSLSCETSD 60 HVMNKVSAAG LCRQDSSTSS YQSNATPAKR EREIIGVNNS KAASRMLIIS DEEEYDDGCN 120 IRKKHRLSKS QSALLEQSFR QHTTLNPVQK QQLARELNLR PRQVEVWFQN RRARTKLKQI 180 EADYELLKKC CQTLTDENRR LKKEVQELKA LKLMKPSLYM QAAALTNCPS CSGGGHGGAA 240 CKTKTKTSFT LAPIPHFYNP VTSPSAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	178	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019182808.1	1e-135	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	9e-65	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A4D8YV98	5e-82	A0A4D8YV98_SALSN; Homeobox-leucine zipper protein
STRING	VIT_00s0732g00010.t01	2e-73	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-63	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]