PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000271.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 413aa MW: 45892.5 Da PI: 8.835

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000271.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.8	5.4e-25	78	122	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e Itr_sc000271.1_g00010.1 78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 122 79****************************************985 PP
2	QLQ	57	5.8e-20	11	45	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa Q+q+L++Q+l+yKy+++++PvPp+Ll i+ Itr_sc000271.1_g00010.1 11 PFTAIQWQELEHQALIYKYMVSGMPVPPDLLYSIR 45 8******************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.5E-10	10	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.001	11	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.3E-15	11	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.325	78	122	IPR014977	WRC domain
Pfam	PF08879	4.0E-21	79	121	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MMSGGRSSRL PFTAIQWQEL EHQALIYKYM VSGMPVPPDL LYSIRRSLDS SLSSKLLLHQ 60 PQHYGWNYFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV 120 EVSTAAAVQA TTPQKAIPFS PITTTTSGGC GGGGGGGLSP TTPTSLPFSY LSAAATQPSS 180 ESHHPFLYPF PSSAARPEDH TANFLLDSGA YSRNGYGHGM KEEVDEHVFF SSETSRAMRS 240 ASGSLDDTSW QVAPLTMASP TLAQLKQHKT TYVSANPQQF HEGLAAGSDG KNTDSMHHMK 300 LGSSEEHHQP KKVMHHFFDE WPQETKHSWL DDSGDKYSTH GPLFKTHLSI SIPNSPHDFF 360 MTHNGKSPLL TINHQSLYHG LVGYMVKQRG GERVVVWGAF TAPASLYMCN EVF

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MMSGGRSSRL PFTAIQWQEL EHQALIYKYM VSGMPVPPDL LYSIRRSLDS SLSSKLLLHQ  60
PQHYGWNYFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EVSTAAAVQA TTPQKAIPFS PITTTTSGGC GGGGGGGLSP TTPTSLPFSY LSAAATQPSS  180
ESHHPFLYPF PSSAARPEDH TANFLLDSGA YSRNGYGHGM KEEVDEHVFF SSETSRAMRS  240
ASGSLDDTSW QVAPLTMASP TLAQLKQHKT TYVSANPQQF HEGLAAGSDG KNTDSMHHMK  300
LGSSEEHHQP KKVMHHFFDE WPQETKHSWL DDSGDKYSTH GPLFKTHLSI SIPNSPHDFF  360
MTHNGKSPLL TINHQSLYHG LVGYMVKQRG GERVVVWGAF TAPASLYMCN EVF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	1e-49	HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBank	HG975519	1e-49	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019191664.1	0.0	PREDICTED: growth-regulating factor 1-like
TrEMBL	A0A484LXQ9	1e-126	A0A484LXQ9_9ASTE; Uncharacterized protein
STRING	XP_009767378.1	1e-126	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA743	23	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	8e-47	growth-regulating factor 5