PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000271.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YA

Protein Properties

Length: 263aa MW: 28439.1 Da PI: 10.4471

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000271.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.6	7.7e-32	123	179	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq Rakle+++kl k+r+pylheSRh hA++R RgsgGrF Itr_sc000271.1_g00005.1 123 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKTRRPYLHESRHLHAVNRVRGSGGRF 179 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.8E-36	121	182	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.256	122	182	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.5E-27	125	179	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.3E-23	125	147	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	127	147	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.3E-23	156	179	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MEPLSLQLQG HASPPAQSSF QSPREVTAAR KTTSQDQCAS SGSEESRGKH VPAQIKPMFV 60 ISNPEFPVNP AQGEMGQSTI HSNYNYSDPY FSGLFTAYGP QPFPQMVGIA PARVPLPLDL 120 AEDGPIYVNA KQYHGILRRR QIRAKLEAQN KLVKTRRPYL HESRHLHAVN RVRGSGGRFL 180 STKKLQESLS MNCGSGSGSA KRHKASTAST PHGMSQGVHG NVMFQPPDHH HRLSSLPSHM 240 AAAAASMQGG GGLACNAYSP VVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	123	184	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019191956.1	1e-178	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_019191957.1	1e-178	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_019191958.1	1e-178	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q93ZH2	2e-44	NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBL	A0A328CWV3	1e-104	A0A328CWV3_9ASTE; Uncharacterized protein
STRING	XP_009801470.1	1e-94	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5009	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	2e-44	nuclear factor Y, subunit A3