PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000269.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 830aa MW: 90439.8 Da PI: 6.3357

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000269.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.1	2e-20	130	185	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++eLe++F++n++p++++r eL ++l+L+ +qVk+WFqNrR+++k Itr_sc000269.1_g00012.1 130 RKKYHRHTPYQIQELESAFKENPHPDEKSRLELGRRLNLESKQVKFWFQNRRTQMK 185 7999*************************************************999 PP
2	START	171.8	4.5e-54	339	563	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 ela +a++el+k+a+ +ep+W +s e +n +e+ ++f + + + +ea rasg v+ +++ lve+l+d + +W e+++ Itr_sc000269.1_g00012.1 339 ELAFTAMNELLKLAEIGEPLWYRSLdgfaEALNLEEYDRTFHSCLGmrptnFITEATRASGTVIFNSMALVETLMDAN-RWAEMFT 423 57899******************999999999999999955444999999**********************.*** PP ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS START 78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152 +a++++viss+ g+lqlm elq lsplvp + f+R+++q+ +g+w+ivdvSvd ++ ++ +++ ++ lpSg+ Itr_sc000269.1_g00012.1 424 glvgRASIIDVISSNssgsrnGFLQLMHGELQILSPLVPlHHVKFLRFCKQHAEGVWAIVDVSVDMIREGTQPHEFPSCRILPSGC 509 *******************************************************************9999******* PP EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++++ng+skv+w+ h++++++++h+ +r+l++sg+ +ga++w+atlqrqce+ Itr_sc000269.1_g00012.1 510 IVQDMPNGYSKVIWIQHMEYDESTVHNFFRPLIRSGMGFGAQRWLATLQRQCEC 563 **************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-20	113	187	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.2E-22	116	187	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.172	127	187	IPR001356	Homeobox domain
SMART	SM00389	2.2E-17	129	191	IPR001356	Homeobox domain
Pfam	PF00046	4.0E-18	130	185	IPR001356	Homeobox domain
CDD	cd00086	2.51E-18	130	187	No hit	No description
PROSITE profile	PS50848	39.256	330	566	IPR002913	START domain
SuperFamily	SSF55961	1.11E-26	332	563	No hit	No description
CDD	cd08875	2.83E-104	334	562	No hit	No description
SMART	SM00234	1.7E-36	339	563	IPR002913	START domain
Pfam	PF01852	1.7E-46	339	563	IPR002913	START domain
SuperFamily	SSF55961	3.16E-11	592	817	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence Send to blast
MMTTFGGSIG SSGSGIVGGG SGGGGGGGGG GARMVADSRP YSSMTTQPQM VAPPMVQPPR 60 SMFNTPPLSL ALKPKMEGLG ELGMIGENFD PGSMGRARED EYESRSGSEN FEGASGDDQD 120 NTPGDKSSKR KKYHRHTPYQ IQELESAFKE NPHPDEKSRL ELGRRLNLES KQVKFWFQNR 180 RTQMKTQLER HENAILKQEN DKLRIENIAM KEAMSTPICN QCGGQAILGE VHVEEHHLRI 240 ENARLRDELN RICVLANKFL GKPFSSFPGA MAPPAMANSG LELAVGRNSF GGLNPVDSSL 300 PLGLDFGNGI SSGMPLMPSR ATPNMSGVEA SYDKSVFMEL AFTAMNELLK LAEIGEPLWY 360 RSLDGFAEAL NLEEYDRTFH SCLGMRPTNF ITEATRASGT VIFNSMALVE TLMDANRWAE 420 MFTGLVGRAS IIDVISSNSS GSRNGFLQLM HGELQILSPL VPLHHVKFLR FCKQHAEGVW 480 AIVDVSVDMI REGTQPHEFP SCRILPSGCI VQDMPNGYSK VIWIQHMEYD ESTVHNFFRP 540 LIRSGMGFGA QRWLATLQRQ CECLAVIMSS SMPSTDNSGV SHAGRRSIAS LAQRMTRSFC 600 AVVCGNIYKW EPIQTGNGDD AARLNMRKSI GEPGEPPGVV LSATKTIWLP ISRQHLFDFL 660 RSEETRNQWD VLSNGTLQQM IQISKGQDTA NQISLYRNTA SASVNQNSML ILQESCNDIS 720 GSLIAYASVG APEMTMVMNG GDSSCVALLP SGFSIVPDCF NNSGWPDDPK GTLPKEGGPG 780 NNSTGALLTV GFQMLVSSLP GAKLTMESVE TVNALISRMV MDIKAAFHCN

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence Send to blast

MMTTFGGSIG SSGSGIVGGG SGGGGGGGGG GARMVADSRP YSSMTTQPQM VAPPMVQPPR  60
SMFNTPPLSL ALKPKMEGLG ELGMIGENFD PGSMGRARED EYESRSGSEN FEGASGDDQD  120
NTPGDKSSKR KKYHRHTPYQ IQELESAFKE NPHPDEKSRL ELGRRLNLES KQVKFWFQNR  180
RTQMKTQLER HENAILKQEN DKLRIENIAM KEAMSTPICN QCGGQAILGE VHVEEHHLRI  240
ENARLRDELN RICVLANKFL GKPFSSFPGA MAPPAMANSG LELAVGRNSF GGLNPVDSSL  300
PLGLDFGNGI SSGMPLMPSR ATPNMSGVEA SYDKSVFMEL AFTAMNELLK LAEIGEPLWY  360
RSLDGFAEAL NLEEYDRTFH SCLGMRPTNF ITEATRASGT VIFNSMALVE TLMDANRWAE  420
MFTGLVGRAS IIDVISSNSS GSRNGFLQLM HGELQILSPL VPLHHVKFLR FCKQHAEGVW  480
AIVDVSVDMI REGTQPHEFP SCRILPSGCI VQDMPNGYSK VIWIQHMEYD ESTVHNFFRP  540
LIRSGMGFGA QRWLATLQRQ CECLAVIMSS SMPSTDNSGV SHAGRRSIAS LAQRMTRSFC  600
AVVCGNIYKW EPIQTGNGDD AARLNMRKSI GEPGEPPGVV LSATKTIWLP ISRQHLFDFL  660
RSEETRNQWD VLSNGTLQQM IQISKGQDTA NQISLYRNTA SASVNQNSML ILQESCNDIS  720
GSLIAYASVG APEMTMVMNG GDSSCVALLP SGFSIVPDCF NNSGWPDDPK GTLPKEGGPG  780
NNSTGALLTV GFQMLVSSLP GAKLTMESVE TVNALISRMV MDIKAAFHCN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019200481.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Refseq	XP_019200482.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Refseq	XP_019200483.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A328E0A0	0.0	A0A328E0A0_9ASTE; Uncharacterized protein
STRING	XP_009606532.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1626	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]