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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000268.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 876aa MW: 97830.5 Da PI: 5.735 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 386.6 | 2.9e-118 | 503 | 873 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lL+ cAeav ++d ++a+++L++l++++s++gd mqRla+yf+ +L+ar+a+s++++ykal +++ts ++ l+a++lf Itr_sc000268.1_g00002.1 503 LRTLLTLCAEAVVADDRRNASEFLKQLRQHSSQTGDGMQRLAHYFADGLEARMAGSGTQIYKALITKPTS---AADILKAYQLFLA 585 5789****************************************************************99...9************ PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 ++P+ k+s++ N++ ++ +++++ vH+iDf+i +G+QWp+++q L+sR++gpp+lRiTg++ p++g +e++eetg+rLa++Ae Itr_sc000268.1_g00002.1 586 ICPFRKISNFFSNKTTMNLAQSATSVHVIDFGILYGFQWPCFIQRLSSRKGGPPRLRITGIDLPQPGfrPAERVEETGKRLANYAE 671 ******************************************************************9******************* PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 +++vpfefn+ +ak++e++++e++++++gE+l+Vn+ ++l +llde+v ++s+rd vLkl+++l+P+v++ + +ns+ F +r Itr_sc000268.1_g00002.1 672 RFNVPFEFNA-IAKKWETIKVEDIKINKGEVLVVNCLFRLRNLLDETVVVNSPRDIVLKLIRELNPHVFIQGIVNGAYNSPFFITR 756 **********.7************************************************************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 f eal ++s+lfd+l++++pr+ +eri +E+ ++g+e++nv+ace+aer+er et+++W+ r ++aGF p+pl+++++k + + Itr_sc000268.1_g00002.1 757 FREALFHFSSLFDMLDTNVPRNIHERILIEKTIFGQEAKNVIACETAERVERPETYKQWHVRNMRAGFLPLPLNKEIMKMSRDRAK 842 ************************************************************************************99 PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++d + ++e+ ++l++gWk+r ++++S+Wr Itr_sc000268.1_g00002.1 843 VYNKD-FVIDEDGEWLLQGWKGRIVYALSSWR 873 99966.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.28 | 477 | 854 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-115 | 503 | 873 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 876 aa Download sequence Send to blast |
MVMERNVRVI CEASGDKLKG QTQSVFLDPN LISSLNISET LAVSNGMTSN LCDEGLPNFL 60 NPTVIDSLRI SQTLVDRNRC IENLYGESIS KFSDTVLIEN SRGEQSLQIG NSCHGGIPSF 120 PDPISVGSLN VSQTCLDRNE LAGNLNGQAA SDFLDPVLID NLRISQTSGN QNGLTGVLND 180 DGPPCVMDLH LINSLGVCED LLDQNQFAFP PLQSDPKLNV VAPSNEGDAH EDFDFNDGDL 240 NYIGQMLMEE NMEEKVCMFQ ESTALQDTER SFYEAIGEKY PPPAGHYTVS NSDQNKISVD 300 GNYHNSIKNA NSRLLCPKMD PYPSESDIYS AQCIQVSVPL QTISQSSYST SSSSGTINDG 360 HVDSPVSTLR IPEICNSNES IMKFTKRVEE TGLGYNGKKR SAEKNEVAVN MEKNYENLHN 420 EDLEALEGRS SKQSAVSSDL TLKPEVFDMV LLCSGGRNES ALRQALQIVS IKNATDNDDS 480 KASNGGKKSR RKKQRGKRDT VDLRTLLTLC AEAVVADDRR NASEFLKQLR QHSSQTGDGM 540 QRLAHYFADG LEARMAGSGT QIYKALITKP TSAADILKAY QLFLAICPFR KISNFFSNKT 600 TMNLAQSATS VHVIDFGILY GFQWPCFIQR LSSRKGGPPR LRITGIDLPQ PGFRPAERVE 660 ETGKRLANYA ERFNVPFEFN AIAKKWETIK VEDIKINKGE VLVVNCLFRL RNLLDETVVV 720 NSPRDIVLKL IRELNPHVFI QGIVNGAYNS PFFITRFREA LFHFSSLFDM LDTNVPRNIH 780 ERILIEKTIF GQEAKNVIAC ETAERVERPE TYKQWHVRNM RAGFLPLPLN KEIMKMSRDR 840 AKVYNKDFVI DEDGEWLLQG WKGRIVYALS SWRPAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-48 | 485 | 876 | 1 | 382 | Protein SCARECROW |
5b3h_A | 3e-48 | 486 | 876 | 1 | 381 | Protein SCARECROW |
5b3h_D | 3e-48 | 486 | 876 | 1 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019151179.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Refseq | XP_019151180.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Refseq | XP_019151181.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Refseq | XP_019151182.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A1J6KJ68 | 0.0 | A0A1J6KJ68_NICAT; Scarecrow-like protein 14 | ||||
STRING | XP_009611175.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |