PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000267.1_g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 378aa MW: 41416.6 Da PI: 7.7666 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.4 | 1.9e-11 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + e+Cr+f+r G C+yGdrCkF H+ Itr_sc000267.1_g00019.1 4 RKEPCRNFLR-GSCHYGDRCKFLHV 27 789*******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 17.478 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-6 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-9 | 4 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.58E-6 | 4 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-8 | 6 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MPPRKEPCRN FLRGSCHYGD RCKFLHVTQQ QPKPNVFGFG SQNGTQFQRT NFQQQQQQPN 60 PFGFGVQNNS QSRGANDVGL KQNQQKPFEN KWIRSSANAS NTSARQPDNQ QAAANHVCTD 120 PESCKRQIIE DFQNEKPLWN LTCYGHRKNG PCDVIGDVSY EELRVAAYDD AKRGLNLQSI 180 VERERGLITS KLAEFDNLVR NSYSASANSA FGSGSQSPLF GASQNVTTSA QSPPLTSSFS 240 QLGAFLNTGL SATPSNTLQQ SNPFENFSQM SGTFGVNNVP FGNAGSLGSQ FGAQSFHTPF 300 TSSSASLNNA MAGERNSSSV SLFPQLSGSV GQSFGNTGLI KQKEKAILDD SIWSKEWKIG 360 ELFSFQIPEE APPDEYIF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019174735.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 46 | ||||
TrEMBL | A0A484NFL0 | 1e-158 | A0A484NFL0_9ASTE; Uncharacterized protein | ||||
STRING | XP_009798981.1 | 1e-126 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9439 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.2 | 3e-54 | C3H family protein |