PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000264.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRF
Protein Properties Length: 463aa    MW: 50306.2 Da    PI: 8.3737
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000264.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.99.7e-25133176144
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                              d+ep+rCrRtDGKkWRCsr+vl+++k+CErH h++r rsrk++e
  Itr_sc000264.1_g00020.1 133 DPEPWRCRRTDGKKWRCSRDVLPDQKYCERHAHKNRPRSRKPVE 176
                              79***************************************987 PP
2QLQ47.45.9e-1782115336
                      QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                              FTa+Q q++++Q l+yKyL+a++PvPp+Ll +++
  Itr_sc000264.1_g00020.1  82 FTASQRQEFERQSLIYKYLMASLPVPPQLLIPLP 115
                              ******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.7E-780116IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.64181116IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.2E-1182114IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.333133177IPR014977WRC domain
PfamPF088792.1E-20134176IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGSGERSGKL AGLHDDSSSY PCTKKIAKLN RQFQFSPSET QISCFGDGGN GTSDAPAGGP  60
IFFNSAASLT GGSMGSEKAV VFTASQRQEF ERQSLIYKYL MASLPVPPQL LIPLPKTQSN  120
KSGPDLKFPA GSDPEPWRCR RTDGKKWRCS RDVLPDQKYC ERHAHKNRPR SRKPVEIQSH  180
KNSRNHNNNN NNNNNYPVTV PSFQFPATAS CDXXXXXXXC DQNRFEPDIS GAIRPLVLIG  240
IGFEPDIRPL GTWHSMLLCN EWFARGGNTC NQQKQQFVLS PPPSTLGYTI GNAINMNTSS  300
LYRPELSSNE QGFVNPNPFL EGQEARSHHQ VNSAFLSHNM AFLQGSLNAN AGIVHPTQHF  360
IDAQFAGQKD GLDNTDHSSL SCKSSDRKLP FCSFRLSVPR GGRGSYEDNQ GLSVGTLNAE  420
SQSSSSIMPG GPLGEALCLG AASNLASPHG YSNSSGTSSC SLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168870.10.0PREDICTED: growth-regulating factor 8
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.12e-27growth-regulating factor 8