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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Itr_sc000264.1_g00006.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family |
B3 |
Protein Properties |
Length: 409aa MW: 44082.2 Da PI: 7.8791 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Itr_sc000264.1_g00006.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 99.8 | 1.6e-31 | 82 | 186 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F
Itr_sc000264.1_g00006.1 82 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSNNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSF 167
89****************************77788999************************************************ PP
EE-.SS.SEE..EEEEE-S CS
B3 83 kld.gr.sefelvvkvfrk 99
++ + + +l++ ++r+
Itr_sc000264.1_g00006.1 168 QRGaAEsVKDRLFIDWRRR 186
*653444666788888876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MRPFSVASSS LSYGRQQQRV WLDGGGEGEG GGGGGEAAGG VMMMMMDSST AAAAGGGGGE 60 GEGGGDEAAS SSGVLMEKEH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSNNEKGLL 120 LNFEDRNGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG AAESVKDRLF 180 IDWRRRPDSH SDHHHHHHRH HHHHLPPISI PHHLSFQRSI YTAAAQPPPW NHQAVLSAPP 240 PYGYTYGFGS TTHHNSVIFN GGASGSAVVV NGNPCSSGIY LRPMSAAHQQ EIMQRRGGGG 300 AMVFESVPVV QGKAAAKRLR LFGVNMDCPI SDSDDCDIIS SSSSAASASV SAASPTTIPT 360 SLQLRPCGGY DTTTQELMEA GCCSCRCYAA LMGRYQSYDA GNVSEVLKR
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 2e-64 | 75 | 187 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-64 | 75 | 187 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
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