PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000263.1_g00033.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 671aa    MW: 73247 Da    PI: 6.2681
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000263.1_g00033.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53e-28225278155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Itr_sc000263.1_g00033.1 225 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 278
                              79*******************.********************************8 PP
2Response_reg79.61e-26371451109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vdD+ l +++++q+l+k +y +v+ ++++++al+ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a g  +
  Itr_sc000263.1_g00033.1  37 VLVVDDDLLCLRIIEQMLRKCKY-NVTICSQATAALNLLRERRgcFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADGRTN 120
                              89*********************.*******************************************6644.8************* PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                              ++ + ++ Ga d+l Kp+  eel +
  Itr_sc000263.1_g00033.1 121 LVMRGIRHGACDYLIKPIRDEELKN 145
                              **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.5E-4234169No hitNo description
SuperFamilySSF521721.42E-3534157IPR011006CheY-like superfamily
SMARTSM004481.4E-3035147IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.86836151IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2337145IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.20E-2738150No hitNo description
PROSITE profilePS5129411.279222281IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-29223283IPR009057Homeodomain-like
SuperFamilySSF466892.33E-19223282IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-24225278IPR006447Myb domain, plants
PfamPF002499.7E-7227276IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MQVEFINDIA ACCSVAALTE AEAAAVVPEQ FPVGLRVLVV DDDLLCLRII EQMLRKCKYN  60
VTICSQATAA LNLLRERRGC FDIVISDVHM PDMDGFKLLE HVGLEMDLPV IMMSADGRTN  120
LVMRGIRHGA CDYLIKPIRD EELKNIWQHV VRKKCNLSKE NDHSGSFEDN DQPKQGGDDA  180
EHASSVIEGA DGVLKTVKKK RDFKDDDDDD DDDEIENDDP ANAKKPRVVW SVELHQQFVS  240
AVNQLGIDKA VPKRILELMN VPGLTRENVA SHLQKFRLYL KRLSGVAQQQ GGLPNSFCGP  300
IEPNPKLGSL GRYEIQALAA SCQIAPQTLA AIHAELLGRP TSGLVLPTID HPALLQASLP  360
GTKYILDDQA VAYGQPLMKC PPNISKQFTQ HLSAEDIPSG VGAWPPKNVC VVPSINLSGL  420
GAQNGNMLTT MMQHHQQQQK QQQMEQHQKL STIPESCRPV NVRPSCLVVP SQSSANFQVT  480
NSPASISQTS SFSKSNVMDS RILSPQSGNS SSGAGEVANW EQKLPYRSNM FCATGSLSPS  540
LSSCSTNADN SASWQVQNSA CIIGASRHAA GVVPNITGIP VPDNHKSNQL LDQGPIRNLG  600
FASRGSSIPS RFAIDESESP PISNIYHSRI YKESNTCKVK QEPDVNIADN AKVSVQTLQR  660
IPPNDFMSVF Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22224284464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176516.10.0PREDICTED: two-component response regulator ORR21-like
SwissprotA2XE311e-148ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A484KTZ30.0A0A484KTZ3_9ASTE; Two-component response regulator
STRINGXP_009599319.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-107response regulator 2