PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000263.1_g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 25261.4 Da PI: 6.8615 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 31 | 53 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Itr_sc000263.1_g00019.1 31 FSCNFCKREFSTSQALGGHQNAH 53 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.05E-7 | 27 | 58 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.0E-5 | 28 | 57 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.531 | 31 | 58 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 33 | 53 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MTTSSPPPSN SSNNNEGESA ERRDFESERV FSCNFCKREF STSQALGGHQ NAHKQERALA 60 KRRQGLLDTV APYVGPHYHP YYHPYSAFSS HLPFYNSFGN RSLGVMPNYS SAIHRLPSSY 120 HHPSFLAENS NYSRLGGEKW SPRSLLTRPE SIQGNNNSSA FATTGFVANS FKLEINNKGQ 180 IGSGIKVDDN HTSADDSKNE GKNNALLGDD EDKGQDQEDA SGIDLSLKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019186530.1 | 1e-130 | PREDICTED: zinc finger protein KNUCKLES-like | ||||
TrEMBL | A0A328DRD9 | 2e-45 | A0A328DRD9_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3967 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 3e-18 | zinc-finger protein 1 |