PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000262.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 778aa    MW: 87927.4 Da    PI: 5.8064
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000262.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.21.4e-1134057751373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cA+av+++d + a++lL+++++++sp gd  qRla +f+ +L+arla+++s++ykal  ++ts    ++ l+a++l+  
  Itr_sc000262.1_g00016.1 405 LRTLLIHCAQAVAADDRRSANELLKQIRQHSSPFGDGSQRLANCFADGLEARLAGTGSQIYKALVNKRTS---AADYLKAYHLYLA 487
                              6789************************************************************999998...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                               +P+ k+s ++ N++     +++ rvHiiDf+i +G+QWp+++q +a+R++gpp++RiTg++ p++g   +e++eetg+rLa++Ae
  Itr_sc000262.1_g00016.1 488 SCPFRKISCFASNKTTIIKSANSMRVHIIDFGILYGFQWPTFIQRIAARDGGPPKVRITGIEFPQPGfrPAERIEETGRRLADYAE 573
                              ***************99999**********************************************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              +++vpfe+n+ +ak++e+++le+L++++++ l+Vn+ ++ ++l+de+v  e  r+ vL+l+++++P+++++   +  ++++ F++r
  Itr_sc000262.1_g00016.1 574 SFNVPFEYNA-IAKKWETITLEDLKLDKDDFLVVNCLYRFKNLHDETVLAEGSRTLVLNLIRKINPDIFIHGIVNGAYSAPFFVTR 658
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f eal ++salfd+le+++pr+  er+ +Ere++gre+ n+ aceg er+er et+++W+ r  +aGF+++p+ + ++++a+  +r
  Itr_sc000262.1_g00016.1 659 FREALFHFSALFDMLETNVPRDVPERMLIEREIFGREALNIMACEGWERVERPETYKQWQVRNLRAGFTQIPFANLIMNKARDKVR 744
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                              + + + + ++e+ ++l+lgWk+r+++++S+W
  Itr_sc000262.1_g00016.1 745 TGYHKDFVIDEDGQWLLLGWKGRTIYAISCW 775
                              *99888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.024379756IPR005202Transcription factor GRAS
PfamPF035144.8E-111405775IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MDPRLYGFSG SRNGVGVGSQ SMPFFPDPCV SNRLNFEDVY QDRELVDGPR ADNSLGVHSF  60
EGFHDPLSRN VALTSHQDDY EDDDFSDADL RYINQILMEE EMEDKTFMLQ ESLELQAKER  120
SFYEALGKKY PPTPEQNPTL LDQSSLSRGD YEVENHQNCI TNSGRGSSSV VNQSSGSLGE  180
YESENHNNFY YITSSNEGSS YLIDPGSINV TGDYISPDLH GFSVPNGSNS SVRSSNSFNN  240
RVDGFVESPV SSFCIPNIYS ESQPIWNFRK GVEEGNKFLP TNNKLLASFD ANQFVTEEPT  300
RETGEVEGTG EKSLRVRKNP HREDLEDQRS SKQAAIYTES TIRSEEFDIV LLHSMGKGEE  360
ALTAYRQNLQ SAICKNIQQN GNSKGPGGGK GRGKKKNGKR DVIDLRTLLI HCAQAVAADD  420
RRSANELLKQ IRQHSSPFGD GSQRLANCFA DGLEARLAGT GSQIYKALVN KRTSAADYLK  480
AYHLYLASCP FRKISCFASN KTTIIKSANS MRVHIIDFGI LYGFQWPTFI QRIAARDGGP  540
PKVRITGIEF PQPGFRPAER IEETGRRLAD YAESFNVPFE YNAIAKKWET ITLEDLKLDK  600
DDFLVVNCLY RFKNLHDETV LAEGSRTLVL NLIRKINPDI FIHGIVNGAY SAPFFVTRFR  660
EALFHFSALF DMLETNVPRD VPERMLIERE IFGREALNIM ACEGWERVER PETYKQWQVR  720
NLRAGFTQIP FANLIMNKAR DKVRTGYHKD FVIDEDGQWL LLGWKGRTIY AISCWVPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-5041177724379Protein SCARECROW
5b3h_D7e-5041177724379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161677.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_019161678.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_019161679.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1U7YLH50.0A0A1U7YLH5_NICSY; scarecrow-like protein 9
STRINGXP_009804922.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein