PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000257.1_g00031.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 408aa    MW: 45906.9 Da    PI: 6.1061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000257.1_g00031.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.9e-114599254
                             HHHHHHHHHHHHHHHHHH......HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  2 rrahnerErrRRdriNsa......feeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             r +h+e E+rRR++iN++      f+ Lr+l+P++    + K +Ka+ L ++++YI+ L
  Itr_sc000257.1_g00031.1 45 RSKHSETEQRRRSKINERqaffliFQILRDLIPEN----DNKRDKASFLLEVIQYIQFL 99
                             889**************88888889*********9....899***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.8E-1842121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-1443126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-94599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.51E-1245104No hitNo description
PROSITE profilePS5088810.1824999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-649105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLRAAMMNHS DEDYDMEFSS RSVDGSSQKV KVEGKSGDRK ANAVRSKHSE TEQRRRSKIN  60
ERQAFFLIFQ ILRDLIPEND NKRDKASFLL EVIQYIQFLH GRIQMYEGGC QDWSQEPSKL  120
MPWRSSSGAV GHSELIRNGS AHEDNGVVDQ KILANTHESI ESDPSAEALY KTMDDLQRLT  180
NEAISFGMQM QPSFFEGSSV QLSPGSSSIE HLASQSQLFY WPDEQNETQR AAPGCSQNDQ  240
EEPETGGGEA GISNELMNTL NQTLASLGVD MLQANVSVQL DIGKHTDTST GADLTRLSSR  300
TTWDQPHKKL RKEQINGNHF PLTRENNPHL AENDFRQIWA EVIFRPQHTH THHRFHRKPS  360
ALVSGEEPEH SALVPGEELG HCSGSRRGTR ALLWHALVLP PETVGLKF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194983.10.0PREDICTED: transcription factor BIM2 isoform X1
RefseqXP_019194984.10.0PREDICTED: transcription factor BIM2 isoform X1
TrEMBLA0A1S4AD794e-94A0A1S4AD79_TOBAC; transcription factor BIM2-like
STRINGXP_009594724.16e-95(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89471821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-41BES1-interacting Myc-like protein 2