PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000255.1_g00014.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 442aa MW: 51054.9 Da PI: 6.7742

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000255.1_g00014.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.3	9.9e-24	120	215	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 +Wt+q+v++Li+a+++++e+ ++ kk++W+ vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++ Itr_sc000255.1_g00014.1 120 KWTDQMVRLLITAVSYIGEEAAAEHsgrrkcsnlHKKGKWKLVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVV 205 7************777777654334445577799******************************************669999 PP trihelix 77 stcpyfdqle 86 ++ ++d ++ Itr_sc000255.1_g00014.1 206 ENPTLLDLMD 215 9999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.8E-22	118	241	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MEGNLSSGNM ITGNGSYPNM DLQGSIRVHH HQPQQAGLYQ QHHSLPRQGS MVRPPIHESF 60 PLSIGGPQGC NKNISWNDYG RGEGVKSASD EEEHSFAEDA AEGYNDQNRG KKAPMWHRVK 120 WTDQMVRLLI TAVSYIGEEA AAEHSGRRKC SNLHKKGKWK LVSKVMAERG HFVSPQQCED 180 KFNDLNKRYK RLNEILGRGT SCEVVENPTL LDLMDHISEK TKEEVRKILS SKHLHYEEMC 240 SYHNGNRLHL PPDPDLQRAL RLALRSRDDH DDNDVRGHGQ DNNDEDDQDD ELDEHERDQC 300 EENHNFNVHH RMYVVPAGGS GKRAKPNVNL GNSLNSQDCS MTFSFQTQNA NGDAMQTLSD 360 GVRGSASQKK WLDHRTLQLE EHKLHIQVQM LELEQERLKW QRFNRKKDHE LEMMRMENER 420 MKLENERMAM ELKWKKMLTD NS

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MEGNLSSGNM ITGNGSYPNM DLQGSIRVHH HQPQQAGLYQ QHHSLPRQGS MVRPPIHESF  60
PLSIGGPQGC NKNISWNDYG RGEGVKSASD EEEHSFAEDA AEGYNDQNRG KKAPMWHRVK  120
WTDQMVRLLI TAVSYIGEEA AAEHSGRRKC SNLHKKGKWK LVSKVMAERG HFVSPQQCED  180
KFNDLNKRYK RLNEILGRGT SCEVVENPTL LDLMDHISEK TKEEVRKILS SKHLHYEEMC  240
SYHNGNRLHL PPDPDLQRAL RLALRSRDDH DDNDVRGHGQ DNNDEDDQDD ELDEHERDQC  300
EENHNFNVHH RMYVVPAGGS GKRAKPNVNL GNSLNSQDCS MTFSFQTQNA NGDAMQTLSD  360
GVRGSASQKK WLDHRTLQLE EHKLHIQVQM LELEQERLKW QRFNRKKDHE LEMMRMENER  420
MKLENERMAM ELKWKKMLTD NS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175376.1	0.0	PREDICTED: uncharacterized protein LOC109170632
TrEMBL	A0A2G9GZ52	0.0	A0A2G9GZ52_9LAMI; Uncharacterized protein
STRING	XP_009590352.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-108	sequence-specific DNA binding transcription factors