PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 326aa MW: 36446.9 Da PI: 7.0406

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000253.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.4	2.4e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk++rrkC+++Cv+apyfp +qp+kfan+hk+FGasnv+kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lqq+ Itr_sc000253.1_g00009.1 7 PCAACKLQRRKCTQECVFAPYFPPDQPQKFANIHKVFGASNVSKLLNELNASQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQQR 92 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 l+q++ +l+++k+e Itr_sc000253.1_g00009.1 93 LKQVQRDLNTAKRE 106 *******99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.719	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MSSSSSPCAA CKLQRRKCTQ ECVFAPYFPP DQPQKFANIH KVFGASNVSK LLNELNASQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISLLQ QRLKQVQRDL NTAKRELANY IGPNAALAPF 120 IQQAGFMQHP NHPSSSGVMQ YNMQPMMMGL PTGIPHSNQL IIRDHQQIHP HPHPQQQQQQ 180 LIESHQLMIG EADLIGSYEQ QHQNPHQFDL MRFNGFESGG GGPVTATGFH QMNTAPAAIS 240 PSLALGAYDN PYPIQQPSQP EHCHPHPHHH DHDQIQLQPQ LLLQQQQPQQ LQIQQQQPPP 300 QPETPQQQQQ RAKSDEGGGR SVGPLC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-47	4	110	8	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-47	4	110	8	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU171680	0.0	GU171680.1 Ipomoea batatas microsatellite Stv_Ipb_512 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019185193.1	1e-153	PREDICTED: LOB domain-containing protein 36
Swissprot	Q9FKZ3	1e-72	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A1J6K9Q5	1e-101	A0A1J6K9Q5_NICAT; Lob domain-containing protein 36
STRING	XP_009774046.1	1e-101	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	6e-74	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]